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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatgcttataacttaattattgaccttgtttttggttgtgagattattaattcctctcatgctaaaacatgtttcattttttttcaacacatttagttcgagtatgttaattgtgaaacccgtttccatgtgaacattcctgtcactgagatcaatatgcggattttctcgtcacag

Basic information

species Physcomitrella patens
transcript PP1S72_57V6.4
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37840289|gb|BJ598297.1|BJ598297
EST:     GCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|208346631|gb|DC916897.1|DC916897
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|208367520|gb|DC954952.1|DC954952
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|18328383|gb|BJ160388.1|BJ160388
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|67569820|gb|BJ942644.1|BJ942644
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|67693091|gb|BJ953324.1|BJ953324
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|18327364|gb|BJ159366.1|BJ159366
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|162272069|gb|FC447863.1|FC447863
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|100443924|gb|BY982152.1|BY982152
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|162272070|gb|FC447864.1|FC447864
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|162267459|gb|FC444210.1|FC444210
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|208371637|gb|DC932466.1|DC932466
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|208394276|gb|DC904096.1|DC904096
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|208390148|gb|DC941955.1|DC941955
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|208363378|gb|DC946976.1|DC946976
EST:     GACTGTGGTTGGCATCNAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGNTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|208399219|gb|DC916574.1|DC916574
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|37847181|gb|BJ605189.1|BJ605189
EST:     CATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: CATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|18343992|gb|BJ176031.1|BJ176031
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|208349231|gb|DC917995.1|DC917995
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|208357921|gb|DC943047.1|DC943047
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
EST: gi|18366790|gb|BJ198869.1|BJ198869
EST:     GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTG                         GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG
genomic: GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatg ... ctcgtcacagGGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTGTGGTTGGCATCAAGTGTAAGGATGGTGTTGTCCTGgtactatatgcttataacttaattattgaccttgtttttggttgtgagattattaattcctctcatgctaaaacatgtttcattttttttcaacacatttagttcgagtatgttaattgtgaaacccgtttccatgtgaacattcctgtcactgagatcaatatgcggattttctcgtcacag

- - - - - - - - - - -  AGGATG