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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGCATTGACACATCCTCAGCCGGAGACGAAAAATGGACCGCAGAAAACGACTGTCACTGCACCTGAGTTTCTGGATATGGTTCCTTGGTATTCAGGgtgcgtggacttcatttcatcttagtatcttagcattcttaaaccattctattgttgttgggcttacgtggtgaaaatgggatggtggcaattggggggtcag

Basic information

species Physcomitrella patens
transcript PP1S72_100V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S72_100V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 6
ATGGGCATTGACACATCCTCAGCCGGAGACGAAAAATGGACCGCAGAAAACGACTGTCACTGCA-CCTGAGTTTCTGGATATGGTTCCTTGGTATTCAGGgtgcgtgga--cttcatttcatcttagtatcttagcattcttaaaccattctattgttgttgggcttacgtggtgaaaatgggat-ggtggcaattggggggtcag--------------
 |||||  | |||||||||| | | |     ||| |||    || ||| |   | |  | || | ||||| ||  | |||||||||||||||||||||||||  ||  |  || || |  |  ||    | || || | |    |   ||  | ||| ||  |   ||   | ||||    |  |   | |    ||     ||                
GTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGA-ATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGGgtatgtcaatgctacactaaaatttcccctttttgcttacc---attgtttcaatgtggtcag---taaacgatgaaggcagtttcactaggtgctgacctatctaattatatatttcag

upper sequence: PP1S72_100V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 5
ATGGGCATTGACACATCCTCAGCCGGAGACGAAAAATGGACCGCAGAAAACGACTGTCACTGCA-CCTGAGTTTCTGGATATGGTTCCTTGGTATTCAGGgtgcgtggacttcatttcatcttagta-tcttagcattcttaaaccattctattgttgttgggcttac-gtggtgaaaatgggatg----gtggcaattggggggtcag
 |||||| || |||| |||| | | |     ||  |||    |  ||| | |||    | || | ||| | ||  | ||||||||||||||||||||||||| |||  |   ||  | |||||  |  | ||  |||  || | |   ||||    |||     |||  || |   |  |||| ||    ||   | ||      ||||
GTGGGCACTGGCACACCCTCTGTCTGTCGAAAATTATGAGAAGTTGAAGA-GACAACAAATGAAACCTAATTTCTTAGATATGGTTCCTTGGTATTCAGGgtacgtctatgccaactgatcttttttctttttacatattttagca--tctaccaatgtcttctttaaagtaggatacttgggctgatctgtctgattttctatttcag