1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTATCAAGATCTTGAACATGATCAAGTTGTATGGAAAACCTATTCGAGTAAATAAGgtgagctatagtaagcgtgcgttacatcctatggtctgaccttgccacagaatgggcaataaacaagtgtttttaagcatatagggctggccagattgat...
species | Physcomitrella patens |
transcript | PP1S70_254V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATCTTGAACATGATCAAGTTGTATGGAAAACCTATTCGAGTAAATAAG GCGTCTCAAGACAAGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTEST: gi|162152540|gb|FC328818.1|FC328818
genomic: AGATCTTGAACATGATCAAGTTGTATGGAAAACCTATTCGAGTAAATAAGgtgagctata ... attgatgcagGCGTCTCAAGACAAGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGT
EST: AGATCTTGAACATGATCAAGTTGTATGGAAAACCTATTCGAGTAAATAAG GCGTCTCAAGACAAGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTEST: gi|208375791|gb|DC936731.1|DC936731
genomic: AGATCTTGAACATGATCAAGTTGTATGGAAAACCTATTCGAGTAAATAAGgtgagctata ... attgatgcagGCGTCTCAAGACAAGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGT
EST: AGATCTTGAACATGATCAAGTTGTATGGAAAACCTATTCGAGTAAATAAG GCGTCTCAAGACAAGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGTEST: gi|208357964|gb|DC938835.1|DC938835
genomic: AGATCTTGAACATGATCAAGTTGTATGGAAAACCTATTCGAGTAAATAAGgtgagctata ... attgatgcagGCGTCTCAAGACAAGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGT
EST: AGATCTTGAACATGATCAAGTTGTATGGAAAACCTATTCGAGTAAATAAG GCGTCTCAAGACAAGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGT
genomic: AGATCTTGAACATGATCAAGTTGTATGGAAAACCTATTCGAGTAAATAAGgtgagctata ... attgatgcagGCGTCTCAAGACAAGAAGAGTTTGGATGTTGGTGCGAACTTGTTCGTGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATCAAGATCTTGAACATGATCAAGTTGTATGGAAAACCTATTCGAGTAAATAAGgtgagctatagtaagcgtgcgttacatcctatggtctgaccttgccacagaatgggcaataaacaagtgtttttaagcatatagggctggccagattgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaacaa