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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGACGTCATACAATTTTACATCGAAATCGGTGCAAATACGAAGGACTCCATGCTTCATCAAAGACTTTCCCAGATTTCCATACCGTGGGCTTCTTATAGgtacatgcgtatctctctgttacatttcttcctcttttccaacattgtttgttactttaatattattagccttagaacgaagtacttaacgtgacattgttttattcttgattttgtcagcgtttgcatgtactcatacagttcctttgaacag

Basic information

species Physcomitrella patens
transcript PP1S70_132V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100452525|gb|CJ975314.1|CJ975314
EST:     CATCAAAGACTTTCCCAGATTTCCATACCGTGGGCTTCTTATAG                         ATACCTCTCGCCATTACCAACCAGTTACGTCTATAAAACGTGTCCTTGACT
genomic: CATCAAAGACTTTCCCAGATTTCCATACCGTGGGCTTCTTATAGgtacatgcgt ... ctttgaacagATACCTCTCGCCATTACCAACCAGTTACGTCTATAAAACGTGTCCTTGACT
EST: gi|100424280|gb|BY958405.1|BY958405
EST:     ATGCTTCATCAAAGACTTTCCCAGATTTCCATACCGTGGGCTTCTTATAG                         ATACCTCTCGCCATTACCAACCAGTTACGTCTATAAAACGTGTCCTTGACT
genomic: ATGCTTCATCAAAGACTTTCCCAGATTTCCATACCGTGGGCTTCTTATAGgtacatgcgt ... ctttgaacagATACCTCTCGCCATTACCAACCAGTTACGTCTATAAAACGTGTCCTTGACT
EST: gi|100362622|gb|BY947445.1|BY947445
EST:     TGCTTTCATCAA-GACTTTTCCAGATTTCCATACCGTGGGCTTCTTATAG                         ATACCTCTCGCCATTACCAACCAGTTACGTCTA
genomic: TGCTT-CATCAAAGACTTTCCCAGATTTCCATACCGTGGGCTTCTTATAGgtacatgcgt ... ctttgaacagATACCTCTCGCCATTACCAACCAGTTACGTCTA