1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGgttatattgaaaatcttagtttttgtaagctttgtgtggtagaatttcaggattatttaaagcttgccaagttattgcagattctagtattgtaacgttgagatattttggagtcgtaatttcggtttgagttcctggtgtattttaacgaaattctggagcttaagttcactttcccttgtttgttttggtaaatcag
species | Physcomitrella patens |
transcript | PP1S6_51V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAG GATGGGTCAACGTACACGCTTCGTTTCTGCAAGGACATGCAAGTCAGATCTEST: gi|7148019|gb|AW509941.1|AW509941
genomic: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGgttatattga ... ggtaaatcagGATGGGTCAACGTACACGCTTCGTTTCTGCAAGGACATGCAAGTCAGATCT
EST: ACGCATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAG GATGGGTCAACGTACACGCTTCGTTTCTGCAAGGACATGCAAGTCAGATCTEST: gi|162275966|gb|FC452034.1|FC452034
genomic: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGgttatattga ... ggtaaatcagGATGGGTCAACGTACACGCTTCGTTTCTGCAAGGACATGCAAGTCAGATCT
EST: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAG GATGGGTCAACGTACACGCTTCGTTTCTGCAAGGACATGCAAGTCAGATCT
genomic: ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGgttatattga ... ggtaaatcagGATGGGTCAACGTACACGCTTCGTTTCTGCAAGGACATGCAAGTCAGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGATTGGATTGGAAAGGAGTTTCAATACACCGATTTCCAGgttatattgaaaatcttagtttttgtaagctttgtgtggtagaatttcaggattatttaaagcttgccaagttattgcagattctagtattgtaacgttgagatattttggagtcgtaatttcggtttgagttcctggtgtattttaacgaaattctggagcttaagttcactttcccttgtttgttttggtaaatcag
- - - - - - - AAGGAG