1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACTGGTGGTTATAGCGAAGATATGATTCCCACCgtaagtgcttcaatctcttatttggatgttgctgcatctgagaatgcatagtacaagaagcgtctgattgttcacttttcatgattgttgtaagagcagt...
species | Physcomitrella patens |
transcript | PP1S6_409V6.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTGGTGGTTATAGCGAAGATATGATTCCCACC GTCGGTTTCCAATATGCGTAAAGTGTCGAAGGGCAATGTTACTATCAAACTEST: gi|208382259|gb|DC919247.1|DC919247
genomic: ACTGGTGGTTATAGCGAAGATATGATTCCCACCgtaagtgctt ... ctctgtacagGTCGGTTT-CAATATGCGTAAAGTGTCGAAGGGCAATGTTACTATCAAACT
EST: ACTGGTGGTTATAGCGAAGATATGATTCCCACC GTCGGTTTCAATATGCGTAAAGTGTCGAAGGGCAATGTTACTATCAAACTGEST: gi|208374248|gb|DC945294.1|DC945294
genomic: ACTGGTGGTTATAGCGAAGATATGATTCCCACCgtaagtgctt ... ctctgtacagGTCGGTTTCAATATGCGTAAAGTGTCGAAGGGCAATGTTACTATCAAACTG
EST: ACTGGTGGTTATAGCGAAGATATGATTCCCACC GTCGGTTTCAATATGCGTAAAGTGTCGAAGGGCAATGTTACTATCAAACTGEST: gi|67577659|gb|BJ949826.1|BJ949826
genomic: ACTGGTGGTTATAGCGAAGATATGATTCCCACCgtaagtgctt ... ctctgtacagGTCGGTTTCAATATGCGTAAAGTGTCGAAGGGCAATGTTACTATCAAACTG
EST: ACTGGTGGTTATAGCGAAGATATGATTCCCACC GTCGGTTTCAATATGCGTAAAGTGTCGAAGGGCAATGTTACTATCAAACTG
genomic: ACTGGTGGTTATAGCGAAGATATGATTCCCACCgtaagtgctt ... ctctgtacagGTCGGTTTCAATATGCGTAAAGTGTCGAAGGGCAATGTTACTATCAAACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTGGTGGTTATAGCGAAGATATGATTCCCACCgtaagtgcttcaatctcttatttggatgttgctgcatctgagaatgcatagtacaagaagcgtctgattgttcacttttcatgattgttgtaagagcagt
- TGGTGG
- - - - - - - CGAAGA