1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGTCGAAGAGACAGAATAAATGAGAAGATGAGAGCACTGCAGGAGCTTATTCCAAACTCTAACAAGgtgcgcacatgttgattgccattctttgtagtcaacatttcatgacttgcactttctattacattcttcatagtccagataatcatgaagtggtatgtgtatggcag
species | Physcomitrella patens |
transcript | PP1S69_37V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAAATGAGAAGATGAGAGCACTGCAGGAGCTTATTC-AAACTCTA-CAAG ACGGACA-GGCATC-ATGCTGGATGAGGCAATTGAEST: gi|162188453|gb|FC365051.1|FC365051
genomic: TAAATGAGAAGATGAGAGCACTGCAGGAGCTTATTCCAAACTCTAACAAGgtgcgcacat ... tgtatggcagACGGACAAGGCATCCATGCTGGATGAGGCAATTGA
EST: TAAATGAGAAGATGAGAGCACTGCAGGAGCTTATTCCAAACTCTAACAAG ACGGACAAGGCATCCATGCTGGATGAGGCAATTGAATACCTAAAAATGCTT
genomic: TAAATGAGAAGATGAGAGCACTGCAGGAGCTTATTCCAAACTCTAACAAGgtgcgcacat ... tgtatggcagACGGACAAGGCATCCATGCTGGATGAGGCAATTGAATACCTAAAAATGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTCGAAGAGACAGAATAAATGAGAAGATGAGAGCACTGCAGGAGCTTATTCCAAACTCTAACAAGgtgcgcacatgttgattgccattctttgtagtcaacatttcatgacttgcactttctattacattcttcatagtccagataatcatgaagtggtatgtgtatggcag
- - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - GAGCTT