1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ATTTATTCGCCGAATTTGGACGCACCTGCTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAGgtcaaactctaagactcttcaatcactctgtaaattttcaattgaaaatcgtgattggacagttatgttcttggaatagttgtatttctcaaaaaaaaat...
species | Physcomitrella patens |
transcript | PP1S68_234V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAG ACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGCEST: gi|100391368|gb|BY971622.1|BY971622
genomic: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAGgtcaaactct ... tattttacagACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGC
EST: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAG ACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGCEST: gi|208353776|gb|DC906464.1|DC906464
genomic: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAGgtcaaactct ... tattttacagACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGC
EST: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAG ACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGCEST: gi|100441829|gb|BY981052.1|BY981052
genomic: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAGgtcaaactct ... tattttacagACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGC
EST: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAG ACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGCEST: gi|208400731|gb|DC904909.1|DC904909
genomic: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAGgtcaaactct ... tattttacagACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGC
EST: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAG ACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGCEST: gi|208365198|gb|DC931164.1|DC931164
genomic: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAGgtcaaactct ... tattttacagACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGC
EST: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAG ACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGCEST: gi|100451564|gb|CJ974830.1|CJ974830
genomic: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAGgtcaaactct ... tattttacagACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGC
EST: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAG ACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGC
genomic: CTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAGgtcaaactct ... tattttacagACTTTTGATGCTGTTGATGGCAAGCAAGCTAGGCGGACAAACTCTTCGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTATTCGCCGAATTTGGACGCACCTGCTCCTCGGTGGGTGTACTTTGCACATGGCATCCTTCTCTTTCTTTACCAGgtcaaactctaagactcttcaatcactctgtaaattttcaattgaaaatcgtgattggacagttatgttcttggaatagttgtatttctcaaaaaaaaat
- - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaaa