Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatccactgtgtgtaatcttttagtagcatcagatatcttaaggagtaatttcatatggactcctagtgtttttcaaggcgaaatttttacagtttgattgaattgcag

Basic information

species Physcomitrella patens
transcript PP1S64_220V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100388772|gb|BY970920.1|BY970920
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|18326988|gb|BJ158989.1|BJ158989
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162155391|gb|FC332005.1|FC332005
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100436557|gb|BY961277.1|BY961277
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100419458|gb|BY957584.1|BY957584
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100356833|gb|BY965303.1|BY965303
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162181882|gb|FC357689.1|FC357689
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100352692|gb|BY945399.1|BY945399
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162171669|gb|FC348130.1|FC348130
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100385535|gb|BY969872.1|BY969872
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162199479|gb|FC373781.1|FC373781
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162223962|gb|FC400320.1|FC400320
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162160782|gb|FC336681.1|FC336681
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100399005|gb|BY990625.1|BY990625
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162197024|gb|FC373364.1|FC373364
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100371629|gb|BY968072.1|BY968072
EST:     GTACGGCAAGAGGTCGCAGAAATCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGA-TATTTTCCTCACTGA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGA
EST: gi|100419055|gb|BY975835.1|BY975835
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGGATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162252058|gb|FC428297.1|FC428297
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGAGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100425857|gb|BY977155.1|BY977155
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100412607|gb|BY974818.1|BY974818
EST:     ACGGCAAGAGGTCGCAGAATTTCATCCTGGAGCGGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: ACGGCAAGAGGTCGCAGAATT-CATCCTGGAGCG-TGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162156210|gb|FC332585.1|FC332585
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100444613|gb|BY982442.1|BY982442
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162153784|gb|FC329915.1|FC329915
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162154422|gb|FC330424.1|FC330424
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100356462|gb|BY946377.1|BY946377
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100364771|gb|BY947900.1|BY947900
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162166622|gb|FC343514.1|FC343514
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162191243|gb|FC367921.1|FC367921
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100388497|gb|BY952099.1|BY952099
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100436447|gb|BY961222.1|BY961222
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAA-GGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162191349|gb|FC368145.1|FC368145
EST:     AGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: AGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100357096|gb|BY983691.1|BY983691
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162246304|gb|FC421049.1|FC421049
EST:     GCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100384231|gb|BY969362.1|BY969362
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100412565|gb|BY974797.1|BY974797
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162152416|gb|FC327979.1|FC327979
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100446806|gb|CJ971105.1|CJ971105
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100384129|gb|BY950515.1|BY950515
EST:     GTACGGCAAGAGGTCGCAGAGTTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162187053|gb|FC362835.1|FC362835
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162244637|gb|FC424604.1|FC424604
EST:     GGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100386709|gb|BY970250.1|BY970250
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|162189527|gb|FC365749.1|FC365749
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
EST: gi|100388392|gb|BY951994.1|BY951994
EST:     GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAG                         TGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA
genomic: GTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 47

GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatcc ... tgaattgcagTGATGTGGAGAATATTTTCCTCACTGATGGAGCCAGCAAAGGTGTGGCGCAGGTCCTCAACGCTCTTATTCGTAATGAAAAGGATGGG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGCTTACAGTGACTCGAGGGGGCTTCCTGGGGTACGGCAAGAGGTCGCAGAATTCATCCTGGAGCGTGATGGATATCCCAGgtgaacatccactgtgtgtaatcttttagtagcatcagatatcttaaggagtaatttcatatggactcctagtgtttttcaaggcgaaatttttacagtttgattgaattgcag

- - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA