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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCGATTGAGCTATTCAACCTCATAGATGAAGTGGAACTCAAGAAGCTTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAAAGgtacggaccttactccagcttccgtaactggtgccttcattttgctttctcttcctgatgtgaatactgctatttctgatgcgactggtttaagtgtcatagtcatcatttgaataggagggcttcgtggaagtgtttagttttgtaccttacattgttcagtcgaattgtgttttcacag

Basic information

species Physcomitrella patens
transcript PP1S62_94V6.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162251336|gb|FC427978.1|FC427978
EST:     TTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAAAG                         GTGAACTGGTTGAACTCTATGTTGGAGAAGTTCTGGCCGTCAATATTAACG
genomic: TTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAAAGgtacggacct ... gttttcacagGTGAACTGGTTGAACTCTATGTTGGAGAAGTTCTGGCCGTCAATATTAACG
EST: gi|162150866|gb|FC327346.1|FC327346
EST:     TTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAAAG                         GTGAACTGGTTGAACTCTATGTTGGAGAAGTTCTGGCCGTCAATATTAACG
genomic: TTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAAAGgtacggacct ... gttttcacagGTGAACTGGTTGAACTCTATGTTGGAGAAGTTCTGGCCGTCAATATTAACG
EST: gi|208383889|gb|DC915186.1|DC915186
EST:     TTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAAAG                         GTGAACTGGTTGAACTCTATGTTGGAGAAGTTCTGGCCGTCAATATTAACG
genomic: TTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAAAGgtacggacct ... gttttcacagGTGAACTGGTTGAACTCTATGTTGGAGAAGTTCTGGCCGTCAATATTAACG
EST: gi|162179908|gb|FC355979.1|FC355979
EST:     TTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAAAG                         GTGAACTGGTTGAACTCTATGTTGGAGAAGTTCTGGCCGTCAATATTAACG
genomic: TTTGTTCTGATAGTTATCCTAACCACGTCTCATTCACCACCTACGAAAAGgtacggacct ... gttttcacagGTGAACTGGTTGAACTCTATGTTGGAGAAGTTCTGGCCGTCAATATTAACG
EST: gi|162268968|gb|FC445460.1|FC445460
EST:     CTCATTCACCACCTACGAAAAG                         GTGAACTGGTTGAACTCTATGTTGGAGAAGTTCTGGCCGTCAATATTAACG
genomic: CTCATTCACCACCTACGAAAAGgtacggacct ... gttttcacagGTGAACTGGTTGAACTCTATGTTGGAGAAGTTCTGGCCGTCAATATTAACG