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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACAAATTGGGAAAATGGGTACCCTGATGGGAGTTTTTGTACCATGTCTCCAGAACATTCTGGGCATTATTTTTTATATTCGGTTCACATGgtgagttagatttttcggtacttttctcattattagataaatgtgtggattcaagttcgaagactacttctgtcgttctgtcaatgatacggatgctgtacag

Basic information

species Physcomitrella patens
transcript PP1S5_444V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S5_444V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ23975 (Selaginella moellendorffii), 5'ss of exon 2
GCACAAATTGGGAAAATGGGTACCCTGATGGGAGTTTTTGTACCATGTCTCCAGAACATTCTGGGCATTATTTTTTATATTCGGTTCACATGgtgagttagatttttcggtacttttctcattattagataaatgtgtggattcaagttcgaagactacttctgtcgttctgtcaatgatacggatgctgtacag
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CCTCGCGGTGCAAAGCTTGGAACACTCATGGGAGTCTTTGTACCATGTCTTCAAAACATTCTAGGAATTATTTTCTACATCCGTTTTTCGTGgtaagtt---ttctccg--agttgtattaagatttggtgatgct----attcggtgacgatatccag------------------------------------