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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTAAGAAGACTCGACGTGGTATTGATCTGGCAACTACTTTAGAACGTATTCCGAAAAATTTCGTGATTACTGATCCTCGCCTTCCAGACAATCCAATTgtaagtacagccacgtttattctctcgaaagtttttgcaccatctgtcctccagcaatcagaccctgcaattaagcttgtttcatgccacacaaatggcag

Basic information

species Physcomitrella patens
transcript PP1S59_175V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S59_175V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA13G40550.1 (Glycine max), 5'ss of exon 5
GAGTAAGAAGACTCGACGTGGTATTGATCTGGCAACTACTTTAGAACGTATTCCGAAAAATTTCGTGATTACTGATCCTCGCCTTCCAGACAATCCAATTgtaagtacagccacgtttattctctcgaaagtttttgcaccatctgtcctccagcaatcagaccctgcaat----taagcttgtttcatgccacacaaatgg-cag
|   | | | |  |||   ||| ||||||| || || ||  | |||||||||  |||||| ||||| |||||||||||  | |||||||||||||| || ||||  |    |    | |||    | |  ||  ||  |  |  |||   ||    |   || | || ||     ||| |||  | | ||      |  |   |||
GCAGAGGGAAAAGCGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTCGTCATTACTGATCCAAGGCTTCCAGACAATCCTATAgtaaagattctctgaatcatttgtactactgtacttaaa--aattgtttccctaggaggtgaacatgtaacactgtaaactttgtacttggtttttactttttcag

upper sequence: PP1S59_175V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ27458 (Selaginella moellendorffii), 5'ss of exon 6
-GAGTAAGAAGACTCGACGTGGTATTGATCTGGCAACTACTTTAGAACGTATTCCGAAAAATTTCGTGATTACTGATCCTCGCCTTCCAGACAATCCAATTgtaagtacagccacgtttattctctcg--aaagtttttgcaccatctgtcctccagcaatcagaccctgcaattaagcttgtttcatgccacacaaatggcag
 |   ||||| |  ||    ||  ||||||||||||| ||| | ||||||||   ||| |||||||| ||||||||||| ||| | |||||||| ||||| ||||| |         | |    |  |  || ||||||   |  | |                                                        
TGCAGAAGAA-ATACGTAAAGGGTTTGATCTGGCAACAACTCTTGAACGTATCGAGAAGAATTTCGTCATTACTGATCCACGCTTGCCAGACAACCCAATCgtaagcatgagagaaatgacatgcatgttaaggttttt---ctgtttag------------------------------------------------------

upper sequence: PP1S59_175V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ07343 (Selaginella moellendorffii), 5'ss of exon 6
-GAGTAAGAAGACTCGACGTGGTATTGATCTGGCAACTACTTTAGAACGTATTCCGAAAAATTTCGTGATTACTGATCCTCGCCTTCCAGACAATCCAATTgtaagtac-agccacgttt-attctctcgaaagtttttgcaccatctgtcctccagcaatcagaccctgcaattaagcttgtttcatgccacacaaatggcag
 |   ||||| |  ||    ||  ||||||||||||| ||| | ||||||||   ||| |||||||| ||||||||||| ||| | |||||||| ||||| ||||| |  ||  |  | | || |     || ||||||   |  | |                                                        
TGCAGAAGAA-ATACGTAAAGGATTTGATCTGGCAACAACTCTTGAACGTATCGAGAAGAATTTCGTTATTACTGATCCACGCTTGCCAGACAACCCAATCgtaagcatgagagaaatgtgatgcatgttaaggttttt---ctgtttag------------------------------------------------------