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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAATCGATGTTTGGAGAGTCTTCAGGAGAACATCAATCGGCTCAACACTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaatcatttgaatcctcactactggattttatctgttttttagtgctcgttgccagaagattgatgctgcataaatttattcgtttgtcgaact...

Basic information

species Physcomitrella patens
transcript PP1S58_38V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278221|gb|FC454456.1|FC454456
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162229091|gb|FC404775.1|FC404775
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162212016|gb|FC388126.1|FC388126
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|67569177|gb|BJ942001.1|BJ942001
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162230248|gb|FC406604.1|FC406604
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|37832289|gb|BJ590301.1|BJ590301
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|19788486|gb|BQ040777.1|BQ040777
EST:     TTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAAG                         GC-GGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAG
genomic: TTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAA-Ggtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAG
EST: gi|162214883|gb|FC391018.1|FC391018
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162184451|gb|FC359197.1|FC359197
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|37849024|gb|BJ607032.1|BJ607032
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|18374966|gb|BJ206544.1|BJ206544
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|208346451|gb|DC917404.1|DC917404
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|208349479|gb|DC905617.1|DC905617
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162214882|gb|FC391017.1|FC391017
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162209537|gb|FC385633.1|FC385633
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|18327512|gb|BJ159515.1|BJ159515
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGA
EST: gi|67692422|gb|BJ952655.1|BJ952655
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162271775|gb|FC448908.1|FC448908
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|18335770|gb|BJ167791.1|BJ167791
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|15261602|gb|BI436912.1|BI436912
EST:     ACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: ACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162201749|gb|FC377501.1|FC377501
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162184450|gb|FC359196.1|FC359196
EST:     CTTACAGGGTTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|37847011|gb|BJ605019.1|BJ605019
EST:     TAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: TAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162212397|gb|FC388125.1|FC388125
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162217291|gb|FC392031.1|FC392031
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162271774|gb|FC448907.1|FC448907
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|67691918|gb|BJ952151.1|BJ952151
EST:     AGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: AGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|7067371|gb|AW497226.1|AW497226
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|37844654|gb|BJ602662.1|BJ602662
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|7147612|gb|AW509534.1|AW509534
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAATAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|208381498|gb|DC919500.1|DC919500
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162201750|gb|FC377502.1|FC377502
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|67508692|gb|BJ941553.1|BJ941553
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162222665|gb|FC397477.1|FC397477
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|18355339|gb|BJ187398.1|BJ187398
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162278222|gb|FC454457.1|FC454457
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162222664|gb|FC397476.1|FC397476
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|208384998|gb|DC903505.1|DC903505
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162229991|gb|FC407353.1|FC407353
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|67701184|gb|BJ961417.1|BJ961417
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|22492659|gb|BU052582.1|BU052582
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162229992|gb|FC407354.1|FC407354
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
EST: gi|162230249|gb|FC406605.1|FC406605
EST:     CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAG                         GCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA
genomic: CTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 22

CAAGAATCGATGTTTGGAGAGTCTTCAGGAGAACATCAATCGGCTCAACACTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaat ... tgctgttcagGCCGGAGACGCGACCGCTGAAGAGCTGTCGAGCGTGACCCAGCTGACTAGACCAGTCTTGCCCATAGTGAAGCCCCAACCTACCGCCGAGATTGTATCTA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGAATCGATGTTTGGAGAGTCTTCAGGAGAACATCAATCGGCTCAACACTTACAGGGCTAAGCTGGTTGTGTTCCCTAGACGCTCGAAGAAGACCAAGgtacgttaatcatttgaatcctcactactggattttatctgttttttagtgctcgttgccagaagattgatgctgcataaatttattcgtttgtcgaact

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG