1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAGTATGTATGACAAGACGGCCGTGGATCGTCTGAAGCTGGTGGCGTCGACGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAGgcaaggacctcgaagtgtggtgtttccttgaatgggtgtggatgtagacgaggatgtagcagtatcgtgggaaatgattaggaggcgtagtgttgaaggg...
species | Physcomitrella patens |
transcript | PP1S56_236V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CNCCGTTCGTGCGCATCACGTACCCNGAAGCCATCGAGATACTAGAGAAG GTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCAEST: gi|22492784|gb|BU052707.1|BU052707
genomic: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAGgcaaggacct ... cattgagcagGTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCA
EST: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAG GTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCAEST: gi|162152027|gb|FC327928.1|FC327928
genomic: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAGgcaaggacct ... cattgagcagGTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCA
EST: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAG GTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCAEST: gi|67695278|gb|BJ955511.1|BJ955511
genomic: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAGgcaaggacct ... cattgagcagGTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCA
EST: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAG GTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCAEST: gi|37836688|gb|BJ594696.1|BJ594696
genomic: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAGgcaaggacct ... cattgagcagGTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCA
EST: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAG GTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCAEST: gi|162223481|gb|FC399111.1|FC399111
genomic: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAGgcaaggacct ... cattgagcagGTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCA
EST: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAG GTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCA
genomic: CGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAGgcaaggacct ... cattgagcagGTGACAGAGAAGAAGTTCGAGAACAAGGTGGAATGGGGAATCGACCTAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTATGTATGACAAGACGGCCGTGGATCGTCTGAAGCTGGTGGCGTCGACGCCGTTCGTGCGCATCACGTACACGGAAGCAATCGAGATACTAGAGAAGgcaaggacctcgaagtgtggtgtttccttgaatgggtgtggatgtagacgaggatgtagcagtatcgtgggaaatgattaggaggcgtagtgttgaaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA