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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGGGTGTTGTGTACTGGATGCTGCCTATCAGGCAATTGGTGGAATGCGCGGAATCAAAGGCATGTTATGGGAGACATCCTTACTCGATCCTGACGAGgtgagtgctatatatcctgtgaaagttaagtgttgtgattattcatatgtttaaatccactgtttagcacaatacattagagtaacatacaatgaatgctatatttaacatacaattttttccgtag

Basic information

species Physcomitrella patens
transcript PP1S56_197V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S56_197V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ25084 (Selaginella moellendorffii), 5'ss of exon 5
GACTGGGTGTTGTGTACTGGATGCTGCCTATCAGGCAATTGGTGGAATGCGCGGAATCAAAGGCATGTTATGGGAGACATCCTTACTCGATCCTGACGAGgtgagtg-----ctatatatcctgtgaaagttaagtgttgtgattattcatatgtttaaatccactgtttagcacaatacattagagtaacatacaatgaatgctatatttaacatacaattttttccgtag
                                  || |||||||||||||| || || ||||||||| | |||||||| ||| | ||||||||||| |||||           ||| | | || ||    || || ||  |    |  ||                                                                                  
----------------------------------GCCATTGGTGGAATGCGAGGGATTAAAGGCATGCTTTGGGAGACGTCCCTGCTCGATCCTGAAGAGgtagtcaaggatttatttgttctttgctgtttcagcgtccttggcaaacag---------------------------------------------------------------------------------

upper sequence: PP1S56_197V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ29959 (Selaginella moellendorffii), 5'ss of exon 5
GACTGGGTGTTGTGTACTGGATGCTGCCTATCAGGCAATTGGTGGAATGCGCGGAATCAAAGGCATGTTATGGGAGACATCCTTACTCGATCCTGACGAGgtgagtg-----ctatatatcctgtgaaagttaagtgttgtgattattcatatgtttaaatccactgtttagcacaatacattagagtaacatacaatgaatgctatatttaacatacaattttttccgtag
                                  || |||||||||||||| || || ||||||||| | ||||| || ||| | ||||||||||| |||||           ||| | | || ||    || || ||  |    |  ||                                                                                  
----------------------------------GCCATTGGTGGAATGCGAGGGATTAAAGGCATGCTTTGGGAAACGTCCCTGCTCGATCCTGAAGAGgtagtcaaggatttatttgttctttgctgtttcagcgtccttggcaaacag---------------------------------------------------------------------------------