1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGTTGCCTCGCAATGGCCGAAATTCTTGCGTCCATTTGCTCTAGGCAGGAAGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAAgtaagtcatcttcaactcctaatttcaatgtcaaagtctgaaacttttaatcagcactagcaataacacccagcaacactgaatttcctccacagttcta...
species | Physcomitrella patens |
transcript | PP1S55_265V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACAGTACGCCAAA AGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGACEST: gi|208395417|gb|DC919979.1|DC919979
genomic: ACAGTACGCCAAAgtaagtcatc ... tgtcgcacagAGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGAC
EST: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAA AGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGACEST: gi|162238481|gb|FC417388.1|FC417388
genomic: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAAgtaagtcatc ... tgtcgcacagAGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGAC
EST: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAA AGTGACAAAACGGGTTGATTTTGEST: gi|162238480|gb|FC417387.1|FC417387
genomic: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAAgtaagtcatc ... tgtcgcacagAGTGACAAAACGG-TTGATTTTG
EST: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAA AGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGACEST: gi|37850721|gb|BJ608729.1|BJ608729
genomic: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAAgtaagtcatc ... tgtcgcacagAGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGAC
EST: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAA AGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGACEST: gi|37844584|gb|BJ602592.1|BJ602592
genomic: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAAgtaagtcatc ... tgtcgcacagAGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGAC
EST: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAA AGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGACEST: gi|37828628|gb|BJ586640.1|BJ586640
genomic: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAAgtaagtcatc ... tgtcgcacagAGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGAC
EST: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAA AGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGACEST: gi|162277435|gb|FC452962.1|FC452962
genomic: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAAgtaagtcatc ... tgtcgcacagAGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGAC
EST: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAA AGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGAC
genomic: AGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAAgtaagtcatc ... tgtcgcacagAGTGACAAAACGGTTGATTTTGGAGACCAAATGGAGTCTAAGGTGGCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGCCTCGCAATGGCCGAAATTCTTGCGTCCATTTGCTCTAGGCAGGAAGCCTGTGCTGCCCGCCGTGATCATCTGGGACAGTAAACAGTACGCCAAAgtaagtcatcttcaactcctaatttcaatgtcaaagtctgaaacttttaatcagcactagcaataacacccagcaacactgaatttcctccacagttcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC