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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGTCTATCTCTGCTCGCTGATTATTTGAAGCCTGGAAGCATTGTCCTCGACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCCTCATGgtattctgcgtgaaaccaacacctaagtctattcttgaacgttgcacctggcattgtctctgcgaagattctcatgaatcggtcggtcactgatccgatgcagcaaacacatagcaataatttatgtctgatttaagtggagtgtgtcgtgttgcag

Basic information

species Physcomitrella patens
transcript PP1S55_159V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208393114|gb|DC929609.1|DC929609
EST:     TCGACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCCTCATG                         GTTGGAGAGACTGGTCATACCGTAGGAGTAGAGCATATTCCTCAACTTGTT
genomic: TCGACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCCTCATGgtattctgcg ... cgtgttgcagGTTGGAGAGACTGGTCATACCGTAGGAGTAGAGCATATTCCTCAACTTGTT
EST: gi|208365688|gb|DC944144.1|DC944144
EST:     TATCTCACTGCTGTCTTCGGCCTCATG                         GTTGGAGAGACTGGTCATACCGTAGGAGTAGAGCATATTCCTCAACTTGTT
genomic: TATCTCACTGCTGTCTTCGGCCTCATGgtattctgcg ... cgtgttgcagGTTGGAGAGACTGGTCATACCGTAGGAGTAGAGCATATTCCTCAACTTGTT
EST: gi|162179521|gb|FC356561.1|FC356561
EST:     TCGACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCCTCATG                         GTTGGAGAGACTGGTCATACCGTAGGAGTAGAGCATATTCCTCAACTTGTT
genomic: TCGACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCCTCATGgtattctgcg ... cgtgttgcagGTTGGAGAGACTGGTCATACCGTAGGAGTAGAGCATATTCCTCAACTTGTT
EST: gi|162179520|gb|FC356560.1|FC356560
EST:     ACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCCTCATG                         GTTGGAGAGACTGGTCATACCGTAGGAGTAGAGCATATTCCTCAACTTGTT
genomic: ACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCCTCATGgtattctgcg ... cgtgttgcagGTTGGAGAGACTGGTCATACCGTAGGAGTAGAGCATATTCCTCAACTTGTT
EST: gi|162197970|gb|FC373985.1|FC373985
EST:     TCGACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCCTCATG                         GNTGGAGAGACTGGTCATACCGTAGGAGTAGAGCATATTCCTCAACTTGTT
genomic: TCGACGTAGGTTCTGGCTCTGGTTATCTCACTGCTGTCTTCGGCCTCATGgtattctgcg ... cgtgttgcagGTTGGAGAGACTGGTCATACCGTAGGAGTAGAGCATATTCCTCAACTTGTT