1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAGGTTTCACAAAATTGTGGACTGGGCTTGGTCCAAACGTTGCTCGTAACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtctttcctatcccagttatttttgatgaagtgctttgttggctgcccctccttttcggaaagtttaagttgtttgcatatccagggcatatacctgcaattggcgcttccattttagattgtgatttcggatgttcgaaaagcactttcagtttactaatatggcatgttgcgctttgcag
species | Physcomitrella patens |
transcript | PP1S54_186V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTTEST: gi|208372592|gb|DC944599.1|DC944599
genomic: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtc ... cgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
EST: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTTEST: gi|162230432|gb|FC407087.1|FC407087
genomic: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtc ... cgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
EST: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTTEST: gi|162158108|gb|FC333903.1|FC333903
genomic: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtc ... cgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
EST: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTTEST: gi|162272364|gb|FC449029.1|FC449029
genomic: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtc ... cgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
EST: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAG ACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
genomic: ACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtc ... cgctttgcagACATTGTTAAAACTTCCTGGTTTTACGGACAACGTTGTTACTCACATCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGTTTCACAAAATTGTGGACTGGGCTTGGTCCAAACGTTGCTCGTAACGCTATCATCAATGCTGCCGAACTGGCCAGTTATGACCAAGTCAAGCAGgtgagacgtctttcctatcccagttatttttgatgaagtgctttgttggctgcccctccttttcggaaagtttaagttgtttgcatatccagggcatatacctgcaattggcgcttccattttagattgtgatttcggatgttcgaaaagcactttcagtttactaatatggcatgttgcgctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC