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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATCCTAAACGTGCTCGATTATTCCTTGACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcatttgattatttcctatttttaatccttcacgtttctaacatacgttttgttattggttgaatttcataacgcacagcaagttacgcgtgagtgtgttcttatgatctaatggatatgctgcag

Basic information

species Physcomitrella patens
transcript PP1S51_320V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208391479|gb|DC937627.1|DC937627
EST:     GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG                         GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: gi|100396694|gb|BY953780.1|BY953780
EST:     GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG                         GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: gi|100434945|gb|BY960883.1|BY960883
EST:     GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG                         GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: gi|162201234|gb|FC378469.1|FC378469
EST:     GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG                         GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: gi|100448937|gb|CJ973236.1|CJ973236
EST:     GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG                         GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: gi|100411612|gb|BY992251.1|BY992251
EST:     GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG                         GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
EST: gi|162194589|gb|FC369980.1|FC369980
EST:     GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAG                         GTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT
genomic: GACAAATCTTTTCAAGACAAAGATATTGATGTTTATCGACCTTTCATAAGgtcttcattt ... tatgctgcagGTTGCTGTCAAAGAAGAACTGGTTTATTCAAGAGAAAAGCTGCAAGATTCT