1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATTGAAAGCTTAGATCCGGCCCTGCTTCGGCCTGGTAGAATCGATCGCAAGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttcgataacctatgatttgtggtcgaagcgtaattgcttgaggtatacattcatgatgaaccttattgacacctttcccagtaggttttgttaagactgttttgttatgatcttgatctgtgcag
species | Physcomitrella patens |
transcript | PP1S4_277V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|37841464|gb|BJ599472.1|BJ599472
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|22131707|gb|BQ826756.1|BQ826756
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|162258957|gb|FC435900.1|FC435900
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|37840238|gb|BJ598246.1|BJ598246
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|162216154|gb|FC392987.1|FC392987
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|37838576|gb|BJ596584.1|BJ596584
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|67578692|gb|BJ950859.1|BJ950859
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|15327439|gb|BI488180.1|BI488180
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|162224575|gb|FC400471.1|FC400471
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|37853193|gb|BJ611201.1|BJ611201
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|162243828|gb|FC423145.1|FC423145
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|18338331|gb|BJ170355.1|BJ170355
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|67724880|gb|BJ975139.1|BJ975139
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|37847407|gb|BJ605415.1|BJ605415
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTCEST: gi|162171248|gb|FC346393.1|FC346393
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
EST: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAG ATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
genomic: AGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttc ... atctgtgcagATACATACTTCTAGAATGACAATGGCTGATGATGTCAACTTGGAGGAATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGAAAGCTTAGATCCGGCCCTGCTTCGGCCTGGTAGAATCGATCGCAAGATCGAGTTTCCATTGCCTGATATTAAAACCAAGAGAAGAATTTTTCAGgtgatatttcgataacctatgatttgtggtcgaagcgtaattgcttgaggtatacattcatgatgaaccttattgacacctttcccagtaggttttgttaagactgttttgttatgatcttgatctgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA