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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATCTGTTTTACTCCTTTGAAGTTGCTGGGGTTCATGTGATCATGCTGGGCTCATACACAGACTACGATCCAAAATCTGCTCAATTCAAGTGGCTACAAgtattggagtttatacctgtctctgtggatgttttttcttttaattatgttcgatcttgttgcgttctttacgttgccatcgtctccgtgtttttcgcttagagcacgattttgcaaatttcag

Basic information

species Physcomitrella patens
transcript PP1S49_289V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S49_289V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT3G20500.1 (Arabidopsis thaliana), 5'ss of exon 2
TAATCTGTTTTACTCCTTTGAAGTTGCTGGGGTTCATGTGATCATGCTGGGCTCATACACAGACTACGATCCAAAATCTGCTCAATTCAAGTGGCTA----CAAgtattggagttt-atacctgtct-ctgtggatgttttttcttt-taattatgttcgatcttgttgcgttctttacgttgccatcgtctccgt--gtttttcgcttagagcacgattttgcaaattt--cag----------------------------------------------------
 ||||| | ||| |||||||| |||||||| || |||| ||||||||| |||||||||||||| || ||||   | || | ||||| ||  ||| ||     ||| |||   | || | | |  |||  | ||  | | |   |||| |    |   | | |||   |  |||  | |  | |   | |  |   |   | |||  |   ||| |  || ||  ||  |   |||                                                    
AAATCTTTATTATTCCTTTGAGGTTGCTGGTGTCCATGCGATCATGCTTGGCTCATACACAGATTATGATCGGTACTCAGATCAATACAGCTGGTTAAAGgtaaggattattgcttgacatccatctgttatgtgtatctcccctttattgccacaataggtctaagta-gttagtaaaatagtgcttggttgaattaatctttttccgtgag-ataatcttttaagatcagcagattctgttacacttattggatttaattttggtgttatctatgatatgtgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162158208|gb|FC335251.1|FC335251
EST:     ACGATCCAAAATCTGCTCAATTCAAGTGGCTACAA                         GCAGATCTTAAGAAGGTGGACAGAAGCAGGACGCCATGGCTTATTGTTGTT
genomic: ACGATCCAAAATCTGCTCAATTCAAGTGGCTACAAgtattggagt ... caaatttcagGCAGATCTTAAGAAGGTGGACAGAAGCAGGACGCCATGGCTTATTGTTGTT