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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctcacgaattgcaatatttaaagcgttgttagtaccacctggattttgtactgattaaatggactgcgatttgttttcactggggttggacgt...

Basic information

species Physcomitrella patens
transcript PP1S49_285V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100388672|gb|BY970820.1|BY970820
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
EST: gi|100392123|gb|BY953205.1|BY953205
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
EST: gi|208377279|gb|DC932429.1|DC932429
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
EST: gi|100394360|gb|BY972030.1|BY972030
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
EST: gi|100416278|gb|BY975313.1|BY975313
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
EST: gi|208384727|gb|DC915274.1|DC915274
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
EST: gi|162215240|gb|FC390813.1|FC390813
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
EST: gi|208346693|gb|DC913339.1|DC913339
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
EST: gi|100408084|gb|BY955901.1|BY955901
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
EST: gi|67569115|gb|BJ941939.1|BJ941939
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
EST: gi|100382686|gb|BY986915.1|BY986915
EST:     GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATG                         GATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC
genomic: GTCCTGCTTACCATTCCCGAGCTAAATCCTGAAATGgtaagtcctc ... tgtggtgcagGATGTGTACAGAATAGGGACTTTGCTGGAACTCATACGAGAACTTGCGTTC