1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGCTAGGTGTACAAAAATTATCAATGCCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacactgcttttacaattataagaagctattatgtagaaatttacagcatggatatgctacgtttcctcgggaaattaacggtctttcttcagtgg...
species | Physcomitrella patens |
transcript | PP1S49_256V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|208348229|gb|DC905485.1|DC905485
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100393232|gb|BY989787.1|BY989787
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|67507498|gb|BJ940380.1|BJ940380
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100442037|gb|BY962930.1|BY962930
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100451078|gb|CJ974586.1|CJ974586
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCNACAGACATAGAGGAGGGCEST: gi|208384192|gb|DC911300.1|DC911300
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100435405|gb|BY979227.1|BY979227
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|208375716|gb|DC936656.1|DC936656
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100445251|gb|BY982880.1|BY982880
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|67716993|gb|BJ967252.1|BJ967252
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100441014|gb|BY962502.1|BY962502
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100385842|gb|BY951036.1|BY951036
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|208397607|gb|DC912225.1|DC912225
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|208387130|gb|DC941302.1|DC941302
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100355304|gb|BY965094.1|BY965094
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|67704545|gb|BJ964778.1|BJ964778
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100352668|gb|BY945387.1|BY945387
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|18361561|gb|BJ193627.1|BJ193627
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|67719122|gb|BJ969381.1|BJ969381
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100417415|gb|BY957319.1|BY957319
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGCEST: gi|100352747|gb|BY945428.1|BY945428
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
EST: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAG TTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
genomic: CCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacact ... tgtacgacagTTTGTCGTTGGATTGGGCGAGAAGGTGTCTCCAACAGACATAGAGGAGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGCTAGGTGTACAAAAATTATCAATGCCAATACGGATGACTCCAAGTACGTCATCAATGTGAAGCAGATTGCTAAGgtattacactgcttttacaattataagaagctattatgtagaaatttacagcatggatatgctacgtttcctcgggaaattaacggtctttcttcagtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT