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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTCGATGGAGGGATGGTACAATCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCGgtgaggctcttccccctcccccccttgtcctgatctgtagttgccattcctgttttggcggttgggagcgactgttttgcttttgagctatattttgattctgtgtaattttcgtacatgcag

Basic information

species Physcomitrella patens
transcript PP1S496_15V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S496_15V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA08G21570.1 (Glycine max), 5'ss of exon 8
CTACTCGATGGAGGGATGGTACAATCGGTCAGCATGTAGAATATGACCAAAGGCCTGATGTGTTCCGgtgaggctcttccccctcccccccttgtcctgatctgtagttgccattcctgttttggcggttgggagcgactgttttgcttttgagctatattttgattctgtgtaattttcgtacatgcag
|||||   ||||||||| ||||||  ||   |||||| ||||||||||||||||||||||| ||| |||     |  |         |   || |   ||      ||||  |   || |||  || |||         ||| ||| | || | || |||    | | | |  |                
CTACTAAGTGGAGGGATAGTACAACAGGCTCGCATGTGGAATATGACCAAAGGCCTGATGTTTTCAGgta---tttataattgaaatcggattatgtagaa--aatgttgatacaactatttatgcagtttt------ttgtattgatattaacctgtatggaaaatattttcag---------------