1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGGCTATCGTTGTGCAAGTTCATGGTCACACCTTCAACTGTCCTAGTACTGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagtttttgatcctctctcttcctctgtatttttccttagccggatgtagatacagcacttcaattttcagtcaatccttctatagtttttcattttgcctctctcactcttattctccaattttactattttcttcaagttgattaccagtaggtactagcatgttaagctaacccagaagcttgtggtttgcag
species | Physcomitrella patens |
transcript | PP1S495_14V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGACGAGCCCCACAAATCATCTGGATATTCCTTCAAAAGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162168211|gb|FC344941.1|FC344941
genomic: GGACGAG-CCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162269948|gb|FC445946.1|FC445946
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162173200|gb|FC349254.1|FC349254
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|18368890|gb|BJ200975.1|BJ200975
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGEST: gi|162197640|gb|FC374474.1|FC374474
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAG
EST: AGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162194077|gb|FC370252.1|FC370252
genomic: AGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162150677|gb|FC327573.1|FC327573
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: AGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162246026|gb|FC421889.1|FC421889
genomic: AGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: AAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162164376|gb|FC341021.1|FC341021
genomic: AAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162192497|gb|FC369127.1|FC369127
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162169804|gb|FC346160.1|FC346160
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162174172|gb|FC350375.1|FC350375
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162152733|gb|FC329739.1|FC329739
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162194863|gb|FC370527.1|FC370527
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162165977|gb|FC340976.1|FC340976
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGGEST: gi|162150678|gb|FC327574.1|FC327574
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
EST: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAG GAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
genomic: TGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagttt ... tggtttgcagGAAGCATTGAGGGAGTATAAGGGTACAGTCATCGCAGTTTCTCACGACCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCTATCGTTGTGCAAGTTCATGGTCACACCTTCAACTGTCCTAGTACTGGACGAGCCCACAAATCATCTGGATATTCCTTCAAAGGAAATGCTTGAGgtaacagtttttgatcctctctcttcctctgtatttttccttagccggatgtagatacagcacttcaattttcagtcaatccttctatagtttttcattttgcctctctcactcttattctccaattttactattttcttcaagttgattaccagtaggtactagcatgttaagctaacccagaagcttgtggtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA