1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGTTGTGTGGGTCTATCACATTACGTGGTTTGTGAACTCAGCATCTCATGTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgtacccaccttacccaaggcattaaatattcttgtgctcacgaacaactcagtccttcagctagttatctgagatttgcacttgtgtggcta...
species | Physcomitrella patens |
transcript | PP1S495_13V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|162187131|gb|FC362913.1|FC362913
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|208365510|gb|DC954751.1|DC954751
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|37850729|gb|BJ608737.1|BJ608737
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|37833193|gb|BJ591205.1|BJ591205
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|67699657|gb|BJ959890.1|BJ959890
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGA-TTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|162231669|gb|FC408262.1|FC408262
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|162231668|gb|FC408261.1|FC408261
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|162171757|gb|FC348426.1|FC348426
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGEST: gi|162195065|gb|FC368779.1|FC368779
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAG
EST: GTTTGGGGCTCACAAAAGTGGAATGCGGGTGATTTATCAAGGAATAAGTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|37851278|gb|BJ609286.1|BJ609286
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|37830486|gb|BJ588498.1|BJ588498
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|18335242|gb|BJ167260.1|BJ167260
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGCEST: gi|162195066|gb|FC368780.1|FC368780
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
EST: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTG GTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
genomic: GTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgt ... ttcattgcagGTGGGTGGCACTTCTTGCATTTGGAGAAGGTTGGCACAATAACCATCATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTGTGTGGGTCTATCACATTACGTGGTTTGTGAACTCAGCATCTCATGTTTGGGGCTCACAAAAGTGGAATACGGGTGATTTATCAAGGAATAACTGgtaaatttgtacccaccttacccaaggcattaaatattcttgtgctcacgaacaactcagtccttcagctagttatctgagatttgcacttgtgtggcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA