1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctctgcagggaatgcatcttctccaattgctcttgatctttgtctatacgtactgcagaaatggttttctgattggatttttatggttgatttgtgcag
species | Physcomitrella patens |
transcript | PP1S48_255V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|162177529|gb|FC353790.1|FC353790
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|162184972|gb|FC362418.1|FC362418
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|37830518|gb|BJ588530.1|BJ588530
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|162149817|gb|FC325932.1|FC325932
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|162184334|gb|FC360536.1|FC360536
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|162164265|gb|FC342080.1|FC342080
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|37832019|gb|BJ590031.1|BJ590031
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATA-TTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|208369090|gb|DC955803.1|DC955803
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|37839957|gb|BJ597965.1|BJ597965
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|162186348|gb|FC361656.1|FC361656
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|162246864|gb|FC424742.1|FC424742
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|162278776|gb|FC454619.1|FC454619
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|162184971|gb|FC362417.1|FC362417
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTGEST: gi|18341097|gb|BJ173130.1|BJ173130
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
EST: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTG CCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
genomic: CTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctct ... atttgtgcagCCGGACTCACAATCACAACTGATGACGATCCAATTTGACTGGAACGGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTATATGAAGGAGGCCAAGGGAACTGTAGATTACCAAGGGTATATTTTTCCGCGGCGGCGTGGAGGAGATTTGgtaagtctctgcagggaatgcatcttctccaattgctcttgatctttgtctatacgtactgcagaaatggttttctgattggatttttatggttgatttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT