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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACATGTGCTGACAAAAGCTCACTTACGGAAGTCGGTGGCATTGGTTAACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatccacacgaggtcagtttctcacacttgatggctgcaaacattccataggaggtgatcactgatacctttcagattcttcaagatccgacacagagagaactgacactattcccctatgaccaaag

Basic information

species Physcomitrella patens
transcript PP1S485_2V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162222426|gb|FC398005.1|FC398005
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAAGAGCTCCATAGAACAATAACCACCATAGTGGAT
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
EST: gi|100400045|gb|BY990751.1|BY990751
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
EST: gi|208350029|gb|DC910264.1|DC910264
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
EST: gi|208383770|gb|DC911480.1|DC911480
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACA-GAAGCTCCATACAACAATA
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGA-GCTCCATACAACAATA
EST: gi|162270839|gb|FC446868.1|FC446868
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
EST: gi|208385996|gb|DC956512.1|DC956512
EST:     CGTGCGCANCAGACGGGGAGCCTTTCAG                         GAGCATGACCAAGANCAAGAGCTNCCATACANCAATAACCACCATAGTGGA
genomic: CGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCT-CCATACAACAATAACCACCATAGTGGA
EST: gi|100421006|gb|BY993569.1|BY993569
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
EST: gi|162208832|gb|FC384968.1|FC384968
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAAGAGCTCCATAGAACAATAACCACCATAGTGGAT
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
EST: gi|208388919|gb|DC932947.1|DC932947
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAAGAGCTC-ATACAACA-TA-CCACCATAGTGGA
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGA
EST: gi|100401340|gb|BY990953.1|BY990953
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAANCA-GAGCTCCATACNNACA-TAACCACCATAGTGG
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAA-CAAGAGCTCCATACA-ACAATAACCACCATAGTGG
EST: gi|100410297|gb|BY992036.1|BY992036
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACNAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
EST: gi|162259231|gb|FC436161.1|FC436161
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
EST: gi|208377449|gb|DC906676.1|DC906676
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATAACCACCATAGTGGAT
EST: gi|100419722|gb|BY957690.1|BY957690
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAGGAGCTCCCATACA-CAATAACC
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCC-ATACAACAATAACC
EST: gi|100415879|gb|BY956969.1|BY956969
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAAACA-GAGCTCCATACAACAATAACCACCATAGTG
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAA-CAAGAGCTCCATACAACAATAACCACCATAGTG
EST: gi|208383925|gb|DC907316.1|DC907316
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAACAAGAGCTCCATACA-CAATA
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAACAAGAGCTCCATACAACAATA
EST: gi|100357038|gb|BY983663.1|BY983663
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAA
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAA
EST: gi|100379676|gb|BY949888.1|BY949888
EST:     ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAG                         GAGCATGACAAAGAAACA-GAGCTCCCATACAACA-TAACCACCATAGTGG
genomic: ACATTGGTGTCAACGACTATCACGTGCGCAACAGACGGGGAGCCTTTCAGgtacacatcc ... atgaccaaagGAGCATGACAAAGAA-CAAGAGCTCC-ATACAACAATAACCACCATAGTGG