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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGAGGAGATGGTTTCATTGAGTGCTGAAGATGAGCCTTTCAAGCTCGCTCCTGGAACATGTTGGGTGCTTTGTGACAACGAGAGTATAAGTCCCAAGgtatgaatatattcacacccgtgtttaagcccaatgatttcaactgatcatatctgaattgaggctttcaatcatagtgactatcagtgaaattcggggt...

Basic information

species Physcomitrella patens
transcript PP1S47_94V6.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208362367|gb|DC954613.1|DC954613
EST:     CTCCTGGAACATGTTGGGTGCTTTGTGACAACGAGAGTATAAGTCCCAAG                         GAAAGCAGGGATAGTCGGAGTTTTGGACCTTTGCCTTTGAGTAACATAGTC
genomic: CTCCTGGAACATGTTGGGTGCTTTGTGACAACGAGAGTATAAGTCCCAAGgtatgaatat ... gggcttacagGAAAGCAGGGATAGTCGGAGTTTTGGACCTTTGCCTTTGAGTAACATAGTC
EST: gi|67693814|gb|BJ954047.1|BJ954047
EST:     CTCCTGGAACATGTTGGGTGCTTTGTGACAACGAGAGTATAAGTCCCAAG                         GAAAGCAGGGATAGTCGGAGTTTTGGACCTTTGCCTTTGAGTAACATAGTC
genomic: CTCCTGGAACATGTTGGGTGCTTTGTGACAACGAGAGTATAAGTCCCAAGgtatgaatat ... gggcttacagGAAAGCAGGGATAGTCGGAGTTTTGGACCTTTGCCTTTGAGTAACATAGTC
EST: gi|37827852|gb|BJ585864.1|BJ585864
EST:     CTCCTGGAACATGTTGGGTGCTTTGTGACAACGAGAGTATAAGTCCCAAG                         GAAAGCAGGGATAGTCGGAGTTTTGGACCTTTGCCTTTGAGTAACATAGTC
genomic: CTCCTGGAACATGTTGGGTGCTTTGTGACAACGAGAGTATAAGTCCCAAGgtatgaatat ... gggcttacagGAAAGCAGGGATAGTCGGAGTTTTGGACCTTTGCCTTTGAGTAACATAGTC
EST: gi|208345079|gb|DC925433.1|DC925433
EST:     CTCCTGGAACATGTTGGGTGCTTTGTGACAACGAGAGTATAAGTCCCAAG                         GAAAGCAGGGATAGTCGGAGTTTTGGACCTTTGCCTTTGAGTAACATAGTC
genomic: CTCCTGGAACATGTTGGGTGCTTTGTGACAACGAGAGTATAAGTCCCAAGgtatgaatat ... gggcttacagGAAAGCAGGGATAGTCGGAGTTTTGGACCTTTGCCTTTGAGTAACATAGTC