1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaacagcgtgtgtgttgagtctgggtctcagcttcttgcgcaatgtgcaatttacctgggccctccgttctgagaattgccgtgcctcgctttat...
species | Physcomitrella patens |
transcript | PP1S47_5V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GC-AGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCA-GA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGEST: gi|208385887|gb|DC956725.1|DC956725
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGG
EST: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGEST: gi|208364937|gb|DC947079.1|DC947079
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: TGCCGTATTTCAAGN ATGTGGAGGTGGAGNTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGEST: gi|100388316|gb|BY951918.1|BY951918
genomic: TGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGEST: gi|100423679|gb|BY976504.1|BY976504
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: CCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTTCA-GA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGEST: gi|208389036|gb|DC937369.1|DC937369
genomic: CCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTT-CAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGG
EST: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGEST: gi|67696009|gb|BJ956242.1|BJ956242
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: GGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTNGTAGCAGGCATTCCAGGTGEST: gi|162248338|gb|FC422553.1|FC422553
genomic: GGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGEST: gi|67572635|gb|BJ945459.1|BJ945459
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGEST: gi|162211220|gb|FC386932.1|FC386932
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTGEST: gi|162242981|gb|FC417621.1|FC417621
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
EST: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGA ATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
genomic: GCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaaca ... ggggatgcagATGTGGAGGTGGAGTTCACGAAGTCACAGCTGGTAGCAGGCATTCCAGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTACGATTCTTCCAGCATTGGAGCGTTTCCTGCCGCCAGAATGGAACGACCACCTGATCACGTGGAGGTTGCCGTATTTCAAGAgtgagcaacagcgtgtgtgttgagtctgggtctcagcttcttgcgcaatgtgcaatttacctgggccctccgttctgagaattgccgtgcctcgctttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG