1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAGgtattaggggttttggatttttctgtgctggcataacctatctattttttggctgactttttgctaatatatcttagctgtgtgaggttaaggctgacac...
species | Physcomitrella patens |
transcript | PP1S47_46V6.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAG GTGGTGTCTAGTGCGATTGTGGATAAGTATATAGGAGAAAGTGCGAGACTCEST: gi|162269526|gb|FC445082.1|FC445082
genomic: CGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAGgtattagggg ... ctttgtgcagGTGGTGTCTAGTGCGATTGTGGATAAGTATATAGGAGAAAGTGCGAGACTC
EST: CTCTTTTAGCACGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAG GTGGTGTCTAGTGCGATTGTGGATAAGTATATAGGAGAAAGTGCGAGACTCEST: gi|208353233|gb|DC926158.1|DC926158
genomic: CTCTTTTAGCACGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAGgtattagggg ... ctttgtgcagGTGGTGTCTAGTGCGATTGTGGATAAGTATATAGGAGAAAGTGCGAGACTC
EST: TTTAGCACGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAG GTGGTGTNTAGTGCGATTGTGGATAAGTATATAGGAGAAAGTGCGAGACTC
genomic: TTTAGCACGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAGgtattagggg ... ctttgtgcagGTGGTGTCTAGTGCGATTGTGGATAAGTATATAGGAGAAAGTGCGAGACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTGTTGTTATATGGGCCTCCTGGGACTGGTAAAACTCTTTTAGCACGAGCAATTGCCAGCAACATTGATGCTAATTTTCTGAAGgtattaggggttttggatttttctgtgctggcataacctatctattttttggctgactttttgctaatatatcttagctgtgtgaggttaaggctgacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG