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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGGTTGATCCGGTAGACGCAACTTTTTGTGAGCCAGTTGAGAGAGCCAACTCAAGTCATTCTTTTACATCTGGTCTGGCGGACACTTTGGGTTTGAGgtaactgacctgtcatattcccaccctttgtccgtctcttttgacttcatgattttgtaactatagatgagcattcggttcatgcgttcaacacctttct...

Basic information

species Physcomitrella patens
transcript PP1S47_263V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S47_263V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA13G31850.1 (Glycine max), 5'ss of exon 2
CGGTGGTTGATCCGGTAGACGCAACTTTTTGTGAGCCAGTTGAGAGAGCCAACTCAAGTCATTCTTTTACATCTGGTCTGGCGGACACTTTGGGTTTGAGgtaactgacctgtcatattcccaccctttgtccgtctcttttgacttcatgattttgtaactatagatgagcattcggttcatgcgttcaacacctttct------
|  | |   |||| | |   || ||||||||||| ||||||||||  ||||| ||||| |||||||||||| | || |||||  ||| | | ||| | ||||   |      | || ||  ||  |  | |  || |   ||  | || || | |  ||  ||       |  ||       || | |   || | |         
CCATTGACAATCCTGCACTGGCCACTTTTTGTGAACCAGTTGAGAAGGCCAATTCAAGCCATTCTTTTACAGCAGGACTGGCTCACAGTGTTGGTCTCAGgtgcat------ttattttttcattcaatcttagtatgaattaccctcttgctctcctatttactctcttgatttttacctgtgtggttgtcaacctatagacata