1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACACTAGGTAGTGTTGATGAAGAGGATCGGACAAAAGTTTATGTGTGTGATATCAATCCTAACATGCTCGAGGTTGGGAAAAAACGAGCCAAAGAGAGGGgtaaatttctacttatttgtcagaagttggaaattcacattgtttaatttgaatgtacttaagaaaaaccaaaactgaacgccttcgatgtgtatgtctt...
species | Physcomitrella patens |
transcript | PP1S47_222V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TATCAATCCTAACATGCTCGAGGTTGGGAAAAAACGAGCCAAAGAGAGGG GACTGGGAAATGCTGCATGCTTAGTCTGGATGCAAGGAGATGCTGAAGCACEST: gi|208369514|gb|DC936304.1|DC936304
genomic: TATCAATCCTAACATGCTCGAGGTTGGGAAAAAACGAGCCAAAGAGAGGGgtaaatttct ... ggaaaaacagGACTGGGAAATGCTGCATGCTTAGTCTGGATGCAAGGAGATGCTGAAGCAC
EST: TATCAATCCTAACATGCTCGAGGTTGGGAAAAAACGAGCCAAAGAGAGGG GACTGGGAAATGCTGCATGCTTAGTCTGGATGCAAGGAGATGCTGAAGCACEST: gi|162194988|gb|FC369053.1|FC369053
genomic: TATCAATCCTAACATGCTCGAGGTTGGGAAAAAACGAGCCAAAGAGAGGGgtaaatttct ... ggaaaaacagGACTGGGAAATGCTGCATGCTTAGTCTGGATGCAAGGAGATGCTGAAGCAC
EST: TATCAATCCTAACATGCTCGAGGTTGGGAAAAAACGAGCCAAAGAGAGGG GACTGGGAAATGCTGCATGCTTAGTCTGGATGCAAGGAGATGCTGAAGCACEST: gi|162220680|gb|FC396892.1|FC396892
genomic: TATCAATCCTAACATGCTCGAGGTTGGGAAAAAACGAGCCAAAGAGAGGGgtaaatttct ... ggaaaaacagGACTGGGAAATGCTGCATGCTTAGTCTGGATGCAAGGAGATGCTGAAGCAC
EST: GTTGGGAAAAACCGAGCCAAAGAGAGGG GACTGGGAAATGCTGCATGCTTAGTCTGGATGCAAGGAGATGCTGAAGCAC
genomic: GTTGGGAAAAAACGAGCCAAAGAGAGGGgtaaatttct ... ggaaaaacagGACTGGGAAATGCTGCATGCTTAGTCTGGATGCAAGGAGATGCTGAAGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACTAGGTAGTGTTGATGAAGAGGATCGGACAAAAGTTTATGTGTGTGATATCAATCCTAACATGCTCGAGGTTGGGAAAAAACGAGCCAAAGAGAGGGgtaaatttctacttatttgtcagaagttggaaattcacattgtttaatttgaatgtacttaagaaaaaccaaaactgaacgccttcgatgtgtatgtctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaaa