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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattttaatctacgtcctggttgtctgctgctttagcctcaacacagtagcttcgttacttcattgtgtctgagtcatcgtctgtgcgaagcgtt...

Basic information

species Physcomitrella patens
transcript PP1S47_221V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162162945|gb|FC338142.1|FC338142
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162267227|gb|FC442639.1|FC442639
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162178892|gb|FC354824.1|FC354824
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162227780|gb|FC402396.1|FC402396
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162197234|gb|FC372534.1|FC372534
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162251200|gb|FC428479.1|FC428479
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|100401256|gb|BY990911.1|BY990911
EST:     CGGCACGAGGAGGAGTGCCACCTATTTANCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATA
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATA
EST: gi|67694460|gb|BJ954693.1|BJ954693
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|67701242|gb|BJ961475.1|BJ961475
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162278834|gb|FC454885.1|FC454885
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|67696785|gb|BJ957018.1|BJ957018
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|67579019|gb|BJ951170.1|BJ951170
EST:     NGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162227779|gb|FC402395.1|FC402395
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162155600|gb|FC331538.1|FC331538
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162162944|gb|FC338141.1|FC338141
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37826268|gb|BJ584280.1|BJ584280
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162195536|gb|FC371837.1|FC371837
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37836459|gb|BJ594467.1|BJ594467
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162251201|gb|FC428480.1|FC428480
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162232573|gb|FC408916.1|FC408916
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37831428|gb|BJ589440.1|BJ589440
EST:     CCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162189471|gb|FC365485.1|FC365485
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37841582|gb|BJ599590.1|BJ599590
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37836914|gb|BJ594922.1|BJ594922
EST:     TGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: TGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|208385121|gb|DC923543.1|DC923543
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37838819|gb|BJ596827.1|BJ596827
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37851393|gb|BJ609401.1|BJ609401
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162155599|gb|FC331537.1|FC331537
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37841160|gb|BJ599168.1|BJ599168
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162189470|gb|FC365484.1|FC365484
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162232574|gb|FC408917.1|FC408917
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37841705|gb|BJ599713.1|BJ599713
EST:     GCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: GCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37828312|gb|BJ586324.1|BJ586324
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37834438|gb|BJ592450.1|BJ592450
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162229810|gb|FC404263.1|FC404263
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|208350796|gb|DC925927.1|DC925927
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37841883|gb|BJ599891.1|BJ599891
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37821608|gb|BJ579674.1|BJ579674
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162252999|gb|FC429060.1|FC429060
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37834052|gb|BJ592064.1|BJ592064
EST:     CCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|67694069|gb|BJ954302.1|BJ954302
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162232142|gb|FC407718.1|FC407718
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162197233|gb|FC372533.1|FC372533
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162156120|gb|FC332287.1|FC332287
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37836915|gb|BJ594923.1|BJ594923
EST:     TTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: TTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37831174|gb|BJ589186.1|BJ589186
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37824908|gb|BJ582974.1|BJ582974
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37824562|gb|BJ582628.1|BJ582628
EST:     CGGCACGAGGAGGAGTGCCACNTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162158801|gb|FC335324.1|FC335324
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37844642|gb|BJ602650.1|BJ602650
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|208360641|gb|DC957866.1|DC957866
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|7067000|gb|AW496855.1|AW496855
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162274482|gb|FC450717.1|FC450717
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|162253000|gb|FC429061.1|FC429061
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCANGAAG                         GATGGACGAAAAT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAAT
EST: gi|7147954|gb|AW509876.1|AW509876
EST:     CGGCACGAGGAGGAGTGCCACCTATGTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATGCTCTTGT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGT
EST: gi|67693517|gb|BJ953750.1|BJ953750
EST:     CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: CGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
EST: gi|37826883|gb|BJ584895.1|BJ584895
EST:     GAGGAGGAGTGCCACCTATTTACCCCGAGGTTGCCGCGCAGGAAG                         GATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT
genomic: GAGGAGGAGTGCCACCTATTTA-CCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 64

ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattt ... tattgcgtagGATGGACGAAAATAGAAACAGTGGATTCTCTTGTCCGGAAGGCGGGATACTCGGGACAAATCACAGAGTCCATGAGACGCAAGTTCCGCATCACTCGGTA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGGCGAACATGGAATGATTTTAGAGTTCACCGACCCTGACGGCACGAGGAGGAGTGCCACCTATTTACCCGAGGTTGCCGCGCAGGAAGgtagacattttaatctacgtcctggttgtctgctgctttagcctcaacacagtagcttcgttacttcattgtgtctgagtcatcgtctgtgcgaagcgtt

- - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG