1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GATGATTTTGGATGGTAGGGAGTTGGAGTTTTATAAGTGGGATGGAGAGCTCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAGgtctgttaatccgtgcttgctttgctttctttcatttctaaacttgtttgcggggaggtctgtttgccagacgatgtgctcattgtctatgttgcttgtatggttccag
species | Physcomitrella patens |
transcript | PP1S47_217V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAG GAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCTEST: gi|162249998|gb|FC427099.1|FC427099
genomic: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAGgtctgttaat ... atggttccagGAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCT
EST: CTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAG GAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCTEST: gi|162260449|gb|FC435062.1|FC435062
genomic: CTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAGgtctgttaat ... atggttccagGAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCT
EST: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAG GAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCTEST: gi|162269610|gb|FC445569.1|FC445569
genomic: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAGgtctgttaat ... atggttccagGAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCT
EST: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAG GAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCTEST: gi|162269919|gb|FC445930.1|FC445930
genomic: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAGgtctgttaat ... atggttccagGAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCT
EST: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAG GAATGGACACGAGAAGAGAAGAACAAGTGCCTCANAGAGACGGAGAAATCTEST: gi|208367180|gb|DC947858.1|DC947858
genomic: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAGgtctgttaat ... atggttccagGAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCT
EST: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAG GAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCTEST: gi|67693892|gb|BJ954125.1|BJ954125
genomic: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAGgtctgttaat ... atggttccagGAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCT
EST: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAG GAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCT
genomic: TCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAGgtctgttaat ... atggttccagGAATGGACACGAGAAGAGAAGAACAAGTGCCTCAAAGAGACGGAGAATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATTTTGGATGGTAGGGAGTTGGAGTTTTATAAGTGGGATGGAGAGCTCTCTCAGCTCCTGGGAGCAGTTAAGGAAAATCTTAACAAAGTTGCAGAGgtctgttaatccgtgcttgctttgctttctttcatttctaaacttgtttgcggggaggtctgtttgccagacgatgtgctcattgtctatgttgcttgtatggttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA