1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AAGAGGTTTTGGAGCGTGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAGgtgctcatcgcttaaactcgcatacgaattcaaccattgtgctacatgtaaaggtgtcagcgtgttgtgttactcgcaggaagttcataatctgtaggtt...
species | Physcomitrella patens |
transcript | PP1S47_196V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATGCTGCTTCAAAGGCGTTGATGCCAGTGCTACGTCAGGATACAAAAG GTTCATTGACAGCTTTATTCAAGCACATTGAGAATTCAGATGAGAACCTTAEST: gi|208383270|gb|DC907244.1|DC907244
genomic: TGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAGgtgctcatcg ... tttcctgcagGTTCATTGACAGCTTTATTCAAGCACATTGAGAATTCAGATGAGAACCTTA
EST: TGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAG GTTCATTGACAGCTTTATTCAAGCACATTGAGAATTCAGATGAGAACCTTAEST: gi|162177459|gb|FC353720.1|FC353720
genomic: TGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAGgtgctcatcg ... tttcctgcagGTTCATTGACAGCTTTATTCAAGCACATTGAGAATTCAGATGAGAACCTTA
EST: TGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAG GTTCATTGACAGCTTTATTCAAGCACATTGAGAATTCAGATGAGAACCTTAEST: gi|100363091|gb|BY984352.1|BY984352
genomic: TGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAGgtgctcatcg ... tttcctgcagGTTCATTGACAGCTTTATTCAAGCACATTGAGAATTCAGATGAGAACCTTA
EST: TGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAG GTTCATTGACAGCTTTATTCAAGCACATTGAGEST: gi|162186312|gb|FC361620.1|FC361620
genomic: TGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAGgtgctcatcg ... tttcctgcagGTTCATTGACAGCTTTATTCAAGCACATTGAG
EST: TGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAG GTTCATTGACAGCTTTATTCAAGCACATTGAGAATTCAGATGAGAACCTTAEST: gi|100359470|gb|BY984270.1|BY984270
genomic: TGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAGgtgctcatcg ... tttcctgcagGTTCATTGACAGCTTTATTCAAGCACATTGAGAATTCAGATGAGAACCTTA
EST: TGATGCTGCTTCAAAGGCGTTGATGCCAGTGCTACGTCAGGATACAAAAG GGTCATTGACAGCTTTTAT-CAAGCACATTGAGAATTCAGATGAGAACCTT
genomic: TGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAGgtgctcatcg ... tttcctgcagGTTCATTGACAGCTTT-ATTCAAGCACATTGAGAATTCAGATGAGAACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGGTTTTGGAGCGTGATGCTGCTTCAAAGGCGTTGATGTCAGTGCTACGTCAGGATACAAAAGgtgctcatcgcttaaactcgcatacgaattcaaccattgtgctacatgtaaaggtgtcagcgtgttgtgttactcgcaggaagttcataatctgtaggtt
- - - - - - - - - ATGCTG
- - - - - - - - - TGCTGC
- - - - - - - - - - GCTGCT