1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTCCAAAATTTGGTGGCTACTTGACGTTCGGAGCATTGTGCAAAGGACAAGAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAGgtatttcattctctgcgtattgttttccgtagggcgatgataactatcaccttttgttctcctcctatttataaagaactggagttgtcttattgctttt...
species | Physcomitrella patens |
transcript | PP1S47_18V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAG GGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCCEST: gi|162169731|gb|FC345268.1|FC345268
genomic: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAGgtatttcatt ... ggtatgacagGGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCC
EST: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAG GGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCCEST: gi|162214492|gb|FC391459.1|FC391459
genomic: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAGgtatttcatt ... ggtatgacagGGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCC
EST: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAG GGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCCEST: gi|18327807|gb|BJ159811.1|BJ159811
genomic: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAGgtatttcatt ... ggtatgacagGGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCC
EST: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAG GGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCCEST: gi|162159094|gb|FC334889.1|FC334889
genomic: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAGgtatttcatt ... ggtatgacagGGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCC
EST: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAG GGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCCEST: gi|162172646|gb|FC348027.1|FC348027
genomic: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAGgtatttcatt ... ggtatgacagGGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCC
EST: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAG GGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCCEST: gi|162158873|gb|FC335396.1|FC335396
genomic: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAGgtatttcatt ... ggtatgacagGGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCC
EST: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAG GGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCCEST: gi|162173166|gb|FC349233.1|FC349233
genomic: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAGgtatttcatt ... ggtatgacagGGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCC
EST: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAG GGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCC
genomic: GAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAGgtatttcatt ... ggtatgacagGGTGAAGTCCATGGATCGAGATACCATGGTGTATGGAGTGATTGGAAAGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCAAAATTTGGTGGCTACTTGACGTTCGGAGCATTGTGCAAAGGACAAGAATCGGCACCTGGACAGCCCACTGTACAGGATCTGATTGAAGTATACAGgtatttcattctctgcgtattgttttccgtagggcgatgataactatcaccttttgttctcctcctatttataaagaactggagttgtcttattgctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaagaa