1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAGTCCCTGGTGGTTCGCATTACTGGCTGCCCTAATGGTTGTGCAAGGCCGTACATGGCAGAGCTTGGATTAGTTGGCGATGGACCCAACAGCTACCAGgtataatttccaactttgacaaaaattattgttgccttaacagctatatttgcatgataatgctatggccacttttgagtacgacttgaatggtttggtgcatttctgttttctctctgtag
species | Physcomitrella patens |
transcript | PP1S47_171V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGTACATGGCAGAGCTTGGATTAGTTGGCGATGGACCCAACAGCTACCAG ATATGGTTGGGTGGCGCTCCAAATCAGACCAGATTAGCGGAGTCATTTATGEST: gi|67693109|gb|BJ953342.1|BJ953342
genomic: CGTACATGGCAGAGCTTGGATTAGTTGGCGATGGACCCAACAGCTACCAGgtataatttc ... ctctctgtagATATGGTTGGGTGGCGCTCCAAATCAGACCAGATTAGCGGAGTCATTTATG
EST: CGTACATGGCAGAGCTTGGATTAGTTGGCGATGGACCCAACAGCTACCAG ATATGGTTGGGTGGCGCTCCAAATCAGACCAGATTAGCGGAGTCATTTATGEST: gi|22492369|gb|BU052292.1|BU052292
genomic: CGTACATGGCAGAGCTTGGATTAGTTGGCGATGGACCCAACAGCTACCAGgtataatttc ... ctctctgtagATATGGTTGGGTGGCGCTCCAAATCAGACCAGATTAGCGGAGTCATTTATG
EST: CGTACATGGCAGAGCTTGGATTAGTTGGCGATGGACCCAACAGCTACCAG ATATGGTTGGGTGGCGCTCCAAATCAGACCAGATTAGCGGAGTCATTTATG
genomic: CGTACATGGCAGAGCTTGGATTAGTTGGCGATGGACCCAACAGCTACCAGgtataatttc ... ctctctgtagATATGGTTGGGTGGCGCTCCAAATCAGACCAGATTAGCGGAGTCATTTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGTCCCTGGTGGTTCGCATTACTGGCTGCCCTAATGGTTGTGCAAGGCCGTACATGGCAGAGCTTGGATTAGTTGGCGATGGACCCAACAGCTACCAGgtataatttccaactttgacaaaaattattgttgccttaacagctatatttgcatgataatgctatggccacttttgagtacgacttgaatggtttggtgcatttctgttttctctctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA