1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CATAGATTTTCCTCCAAAGTACCAGAGTTGGGATACCACTGACCCTTTTGAGCTGTTTGAGGCACCAACAATAAAAAATGAGTCCAATCCTAAGgtacgattctctttttgtcaataaagttgttaaatcccgaaattggaacacgagatctatcgatatgcaaatctgtattctaaatccgatttttgttatt...
species | Physcomitrella patens |
transcript | PP1S474_3V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTTTGAGCTGTTTGAGGCACCAACAATAAAAAATGAGTCCAATCCTAAG GCTCATGTGTGCAAACATCTGCAACAAGAGGCACGTGGTTGTGATTACCTCEST: gi|100440639|gb|BY980459.1|BY980459
genomic: CTTTTGAGCTGTTTGAGGCACCAACAATAAAAAATGAGTCCAATCCTAAGgtacgattct ... gaaactgtagGCTCATGTGTGCAAACATCTGCAACAAGAGGCACGTGGTTGTGATTACCTC
EST: CTTTTGAGCTGTTTGAGGCACCAACAATAAAAAATGAGTCCAATCCTAAG GCTCATGTGTGCAAACATCTGCAACAAGAGGCACGTGGTTGTGATTACCTC
genomic: CTTTTGAGCTGTTTGAGGCACCAACAATAAAAAATGAGTCCAATCCTAAGgtacgattct ... gaaactgtagGCTCATGTGTGCAAACATCTGCAACAAGAGGCACGTGGTTGTGATTACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATAGATTTTCCTCCAAAGTACCAGAGTTGGGATACCACTGACCCTTTTGAGCTGTTTGAGGCACCAACAATAAAAAATGAGTCCAATCCTAAGgtacgattctctttttgtcaataaagttgttaaatcccgaaattggaacacgagatctatcgatatgcaaatctgtattctaaatccgatttttgttatt
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT