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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCTGATGATAGTGACAGCAGTAGTGATGAGGAAGATATCGAAGATTTAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAGgtatgccaacttcatgagatcgtctttgatgaattaagaatttagtttggatggttcacttgtgaagtttcacaaccggacagaccattggtgctctctg...

Basic information

species Physcomitrella patens
transcript PP1S46_317V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162167971|gb|FC344909.1|FC344909
EST:     TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAG                         GTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
genomic: TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAGgtatgccaac ... aattttgtagGTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
EST: gi|100364030|gb|BY966291.1|BY966291
EST:     TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAG                         GTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
genomic: TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAGgtatgccaac ... aattttgtagGTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
EST: gi|100446205|gb|CJ970504.1|CJ970504
EST:     TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAG                         GTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
genomic: TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAGgtatgccaac ... aattttgtagGTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
EST: gi|100437092|gb|BY961347.1|BY961347
EST:     TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAA-CCAATTTTTAAG                         GTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT
genomic: TAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAGgtatgccaac ... aattttgtagGTGCGACTAGTGGCTCATCAGGGTTGTGTCAATAGAGTTAGGGCTATGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGCTGATGATAGTGACAGCAGTAGTGATGAGGAAGATATCGAAGATTTAGAGGGGGCTCCTAATCAGCCAATTCAGTCCAAGAAACCAATTTTTAAGgtatgccaacttcatgagatcgtctttgatgaattaagaatttagtttggatggttcacttgtgaagtttcacaaccggacagaccattggtgctctctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA