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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGgtgcagccttctcccccaaataagttctatgctttgtaggattcttggtatttctcatgtatttaaaaacgagttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag

Basic information

species Physcomitrella patens
transcript PP1S43_32V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: LOC_Os01g38970.1 (Oryza sativa), 5'ss of exon 1
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGgtgcagccttctcccccaaataagttctatgctttgtaggattcttggtatttctcatg-tatttaaaaacg--agttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag
||| || || || || || || ||||| || |||||||||||||| || ||||| ||||| ||||| |||||||| |||||||||||||| || ||||||||   || || |||| |   |    |||| | ||| | ||    | | |||||       | |  ||       | || | ||  | |  |  |||| ||  ||                                   
AAAGCTCTCTGTAGGTTATACTTTGGACCAGATTCCAAATGATATTACGAAGAAGACTCCTGCTAGCTTTGAGCCTTCCATTGACTACGTGGTCACTAAGgttt-gctttttccctctgtt----tctaagatttcttgggcaat-gatatttggtgcactgtgcaattgttgcatttttcatccttattttagaagctat-cttgc--------------------------------

upper sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G700683_T01 (Zea mays), 5'ss of exon 1
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGgtgcagccttctcccccaaataagttctatgctttgtaggattcttggtatttctcatgtatttaaaaacgagttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag
 || || ||||| || |||||  | ||||| ||||| |||||||| |||||||| ||||||||||| || ||||| |||||||| || || ||||| |||||           |      | || | | |   ||||  || |   |   ||| || || |    || | |  |        || | |    |  ||   ||      ||   |                      
GAAGCTCTCAGTAGGCTACACTCTAGATCAGATTCCCAATGATATTACCAAGAAGACTCCAGCTAGCTTCGAGCCTTCCATTGATTATGTGGTTACAAAGgtattattccaatctgtctcttagctttcttaattgtgtgaat---gaagtttttcctgca----aatatgcatc-------tgcagtacatatttaacttctctatattcctt----------------------

upper sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA13G40380.1 (Glycine max), 5'ss of exon 2
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGg--tgcagccttctcccccaaataagttctatgctttgt--aggattcttggtatttctcatgtatttaaaaacgagttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag
 ||  | || || || ||  | ||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||| ||||| || || ||||||||||  |||| | |  |     |    | | ||||| | |    | |   |||||||       | || ||  |||      ||| ||   |  ||| |||                                          
GAAGTTGTCTGTGGGGTATTCTTTGGATCAAATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCTATTGATTATGTGGTTACTAAGgtatgcaacttagttgttgatgatattgctatgatataccaatgtgacttggtaggatggttttaattttaaattgtaaattttgtatagttggtaagtc----------------------------------------

upper sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GLYMA15G05020.2 (Glycine max), 5'ss of exon 2
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGgtgcagccttctcccccaaataagttctatgctttgtaggattcttggtatttctcatgtatttaaaaacgagttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag
|||  | || || || ||  | |||||||| || ||||| ||||| || ||||| || || ||||||||||||||||| ||||| || || |||||||||||   |   |          | |  |        | ||  | | |   |   |   |||| ||||      | || | |   |   || || |   || |                                    
AAAGTTGTCTGTGGGGTATTCTTTGGATCAGATACCAAACGATATAACGAAGAAGACACCGGCTAGTTTTGAGCCCTCAATTGATTATGTGGTTACTAAGgtaaggagcttagttgttgctgatattgccatcatataccaatgtgacttggtaggatgtttttacttttaaattgtaaattttgtataggtaataagtc------------------------------------

upper sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT1G29900.1 (Arabidopsis thaliana), 5'ss of exon 1
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGgtgcagccttctcccccaaataagttctatgctttgtaggattcttggtattt---ctcatgtatttaaaaacgagttatta--tgatgaaatgggaagatagactcatcgcgtttt-----gtgtccgtctttggagtggtacag
 ||  | || || || || || |||||||| ||||| ||||||||||| | |||||| || ||||| || ||||||||||| || || || || ||||||||    | |||    |        || | ||  |||    ||         ||    |     ||||| | ||   |    |  | |||| ||   ||   | |  |||    |  |      | ||  | | |  |    | |||
CAAGTTGTCTGTTGGCTATACCTTGGATCAGATTCCTAATGATATCACGAGGAAAACACCGGCTAGCTTCGAGCCCTCCATCGATTATGTGGTGACTAAGgtttgtcattccatacttttggctttatttgtgttgcgaaatgagatacgcttgactttgaagatttacacacatctatccacttcatgatatataaactcaaatgcatattttgcttaacgatatctatttctttacca-tgcag

upper sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv06s0004g03360.t01 (Vitis vinifera), 5'ss of exon 1
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGgtgcagccttctcccccaaataagttctatgctttgtaggattcttggtatttctcatgtatttaaaaacgagttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag
       || || || ||| |||||||||| ||||||||||| ||||| |||||||| || |||||||||||||| ||||| || || || || || ||||   ||  |  | | |||      ||||||  |       |||  || || |  |  | | || |     |   ||||    ||  ||  ||| ||   |   ||    |   ||| |                  
------GTCGGTTGGTTACTCATTGGATCAGATTCCAAATGACATCACAAAGAAAACACCGGCTAGTTTTGAGCCTTCCATAGATTATGTGGTGACAAAGGCA-AGTgtctttctcca------ttctattgtactagttatttatgctaatgtttctttgttaattgttgtagtatt----tggcatttgaatattttcatgtca---tcgatgttcta----------------

upper sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ17598 (Selaginella moellendorffii), 5'ss of exon 1
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGgtgcagccttctc----ccccaaataagttctatgctttgtaggattcttg-gtatttctcatgtatttaaaaacgagttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag
 || || || || || |||||  |||| || ||||| || || ||||||| ||| || || |||||||||||||| |||||||||||||| || || ||||| |||| || |     |      |   | ||     || ||  |  |||  || ||  |  | | | |  |                                                                     
CAAGCTGTCGGTGGGCTACACTCTGGACCAGATTCCCAACGACATCACCAGGAAGACGCCTGCTAGTTTTGAGCCATCCATTGACTACGTGGTGACAAAGgt-cagctttttttgcgctttttttttctcctgcttcttttaaaacactttcgttttctttgtatgtgtgcag--------------------------------------------------------------------

upper sequence: PP1S43_32V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ29065 (Selaginella moellendorffii), 5'ss of exon 1
AAAACTTTCAGTCGGATACACATTGGATCAAATTCCAAATGATATCACCAAGAAAACTCCAGCTAGTTTTGAGCCCTCCATTGACTACGTTGTTACTAAGgtgcagccttctc----ccccaaataagttctatgctttgtaggat-tcttggtatttctcatgtatttaaaaacgagttattatgatgaaatgggaagatagactcatcgcgttttgtgtccgtctttggagtggtacag
 || || || || || |||||  |||| || ||||| || || ||||||| ||| || || |||||||||||||| |||||||||||||| || || ||||| |||| || |     |      |   | ||     || ||  |  | || || ||  |  | | | |  |                                                                     
CAAGCTGTCGGTGGGCTACACTCTGGACCAGATTCCCAACGACATCACCAGGAAGACGCCTGCTAGTTTTGAGCCATCCATTGACTACGTGGTGACAAAGgt-cagctttatttgcgctttttttttctcctgcttcttttaaaacattttcgttttctttgtatgtgtgcag--------------------------------------------------------------------