1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTTCCTAATGGTGTGGGTGAATATATCGATCACATGGAGGAACTCATGCCAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGGgtgagttctcacgcgcataaacttggtgtagaatcataaacttctggtgacagggcactcccggtttgttctgtgcaagttaagggaattacgtcaattc...
species | Physcomitrella patens |
transcript | PP1S43_170V6.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGG GTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCTEST: gi|162171558|gb|FC347499.1|FC347499
genomic: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGGgtgagttctc ... ttatttccagGTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCT
EST: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGG GTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCTEST: gi|162226907|gb|FC403095.1|FC403095
genomic: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGGgtgagttctc ... ttatttccagGTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCT
EST: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGG GTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCTEST: gi|162169959|gb|FC345899.1|FC345899
genomic: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGGgtgagttctc ... ttatttccagGTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCT
EST: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGG GTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCTEST: gi|208364567|gb|DC935352.1|DC935352
genomic: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGGgtgagttctc ... ttatttccagGTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCT
EST: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGG GTAGCCAGTTTGGGGAAGGGAAGCTTCTGAATAGGGGCATCNTGACNATGTEST: gi|162156233|gb|FC332049.1|FC332049
genomic: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGGgtgagttctc ... ttatttccagGTAGCCAGTT-GGGGAGGGGA-GCTTCTGAATAGGGGCATCTTGACCATGT
EST: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGG GTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCTEST: gi|100407198|gb|BY974050.1|BY974050
genomic: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGGgtgagttctc ... ttatttccagGTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCT
EST: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGG GTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCT
genomic: CAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGGgtgagttctc ... ttatttccagGTAGCCAGTTGGGGAGGGGAGCTTCTGAATAGGGGCATCTTGACCATGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCCTAATGGTGTGGGTGAATATATCGATCACATGGAGGAACTCATGCCAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGGgtgagttctcacgcgcataaacttggtgtagaatcataaacttctggtgacagggcactcccggtttgttctgtgcaagttaagggaattacgtcaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG