1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TACTACTTCTACATGAAGACGAAGATGTCCGGGTTTTTCCAGATCAGTTTCTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtgggactgggcaggcgtgggtgggtatcctggggtagtgcgtaatatttggttgatgggttgtgaggcggttgagtggagtggagggtctgacgggtgtgctgtttgtggcggctggcag
species | Physcomitrella patens |
transcript | PP1S438_29V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|18336095|gb|BJ168117.1|BJ168117
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37839289|gb|BJ597297.1|BJ597297
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|162198386|gb|FC372647.1|FC372647
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|162200708|gb|FC378398.1|FC378398
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|18339069|gb|BJ171095.1|BJ171095
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37835139|gb|BJ593151.1|BJ593151
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37829656|gb|BJ587668.1|BJ587668
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|67725470|gb|BJ975729.1|BJ975729
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|18338110|gb|BJ170134.1|BJ170134
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37840480|gb|BJ598488.1|BJ598488
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37853351|gb|BJ611359.1|BJ611359
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37829360|gb|BJ587372.1|BJ587372
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37848763|gb|BJ606771.1|BJ606771
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37830386|gb|BJ588398.1|BJ588398
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: GGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37822502|gb|BJ580568.1|BJ580568
genomic: GGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATG-TTGTGCGACGTATATATAGGAEST: gi|18340379|gb|BJ172407.1|BJ172407
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|162198385|gb|FC372646.1|FC372646
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|18334076|gb|BJ166092.1|BJ166092
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37828715|gb|BJ586727.1|BJ586727
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37823937|gb|BJ582003.1|BJ582003
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37831542|gb|BJ589554.1|BJ589554
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|208364021|gb|DC950369.1|DC950369
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|162179316|gb|FC356265.1|FC356265
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|18335310|gb|BJ167328.1|BJ167328
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|18337178|gb|BJ169202.1|BJ169202
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|18333659|gb|BJ165674.1|BJ165674
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37835050|gb|BJ593062.1|BJ593062
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGAEST: gi|37852028|gb|BJ610036.1|BJ610036
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
EST: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTG GAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
genomic: CTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtggga ... cggctggcagGAGCTGTGGGGTACCTGGGGTCGTCGATGTTTGTGCGACGTATATATAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACTACTTCTACATGAAGACGAAGATGTCCGGGTTTTTCCAGATCAGTTTCTACTTCGGGTACACGCTGATGTTCTGCCTGGGGTTGGGCATATTCTGTGgtaagtgggactgggcaggcgtgggtgggtatcctggggtagtgcgtaatatttggttgatgggttgtgaggcggttgagtggagtggagggtctgacgggtgtgctgtttgtggcggctggcag
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