1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATTGGTTCTTGATCTTCTGGGACCAAGTCTTGAAGATCTCTTCAACTTTTGCAGTCGGAAGTTTTCCTTGAAGACGGTCCTCATGCTCGCAGATCAACTGgtatgaaaatttttgacatatttcaattttccctgcctattctagttcctgtgaatcaattattgaatagtctagtgatatacgtcccaagcaataacag...
species | Physcomitrella patens |
transcript | PP1S430_12V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCAGTCGGAAGTTTTCCTTGAAGACGGTCCTCATGCTCGCAGATCAACTG ATCAACAGAGTAGAGTACGTTCATGCGAAGAGTTTTCTTCACAGAGACATTEST: gi|162199548|gb|FC373200.1|FC373200
genomic: GCAGTCGGAAGTTTTCCTTGAAGACGGTCCTCATGCTCGCAGATCAACTGgtatgaaaat ... atgaactcagATCAACAGAGTAGAGTACGTTCATGCGAAGAGTTTTCTTCACAGAGACATT
EST: GCAGTCGGAAGTTTTCCTTGAAGACGGTCCTCATGCTCGCAGATCAACTG ATCAACAGAGTAGAGTACGTTCATGCGAAGAGTTTTCTTCACAGAGACATTEST: gi|162240779|gb|FC416345.1|FC416345
genomic: GCAGTCGGAAGTTTTCCTTGAAGACGGTCCTCATGCTCGCAGATCAACTGgtatgaaaat ... atgaactcagATCAACAGAGTAGAGTACGTTCATGCGAAGAGTTTTCTTCACAGAGACATT
EST: GCAGTCGGAAGTTTTCCTTGAAGACGGTCCTCATGCTCGCAGATCAACTG ATCAACAGAGTAGAGTACGTTCATGCGAAGAGTTTTCTTCACAGAGACATTEST: gi|162257199|gb|FC433075.1|FC433075
genomic: GCAGTCGGAAGTTTTCCTTGAAGACGGTCCTCATGCTCGCAGATCAACTGgtatgaaaat ... atgaactcagATCAACAGAGTAGAGTACGTTCATGCGAAGAGTTTTCTTCACAGAGACATT
EST: GCAGTCGGAAGTTTTCCTTGAAGACGGTCCTCATGCTCGCAGATCAACTG ATCAACAGAGTAGAGTACGTTCATGCGAAGAGTTTTCTTCACAGAGACATT
genomic: GCAGTCGGAAGTTTTCCTTGAAGACGGTCCTCATGCTCGCAGATCAACTGgtatgaaaat ... atgaactcagATCAACAGAGTAGAGTACGTTCATGCGAAGAGTTTTCTTCACAGAGACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGTTCTTGATCTTCTGGGACCAAGTCTTGAAGATCTCTTCAACTTTTGCAGTCGGAAGTTTTCCTTGAAGACGGTCCTCATGCTCGCAGATCAACTGgtatgaaaatttttgacatatttcaattttccctgcctattctagttcctgtgaatcaattattgaatagtctagtgatatacgtcccaagcaataacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA