Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAGGGCGACGCACATGTAGCGCCAGTTTTGGCTGAAGAGCAAGAAAGCGTTTCCGAAACTGGTCGACTCTTTGTCCGTAATCTTCCGTATACAGCAACgtaagtcatcttgttgcaaagtactacgttctccactttccttgtactgcccatacgattgagtaatctcttagtgatagtatctgggctccgattattg...

Basic information

species Physcomitrella patens
transcript PP1S42_20V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S42_20V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: Vv01s0011g01060.t01 (Vitis vinifera), 5'ss of exon 4
CTGAGGGCGACGCACATGTAGCGC-CAGTTTTGGCTGAAGAGCAAGAAAG-CGTTTCCGAAACTGGTCGACTCTTTGTCCGTAATCTTCCGTATACAGCAACgtaagtcatcttgttgcaaagtactacgttctccactttccttgtactgcccatacg-attgagtaatctcttagtgatagtatctgggctccgattattg----------------------------------------------------------------------------------------
   | ||     | || | | | |   |||  |    ||      |||||  |||   || |||||||| || ||||||||||||||||| ||||| ||||||||      |||| | |    |      || ||   ||||||| | ||        | ||   | ||| | ||  || ||   | |  | |    | |||                                                                                         
--AAAGGATGGACTCAGGGAACCCATTGTTAAGTTCAAAAGATGGGAAAGATGTTCTTGAGACTGGTCGGCTTTTTGTCCGTAATCTTCCATATACTGCAACgtactgatccttgctccctctttgctt-ttttcttttttcctttttctttttgggtgtatactgcaatatatttttggtaaagtgtaagataaattcatttgtgttgccatttttttattctaattggatttatgtttttcttataacttctgagtcctgattccttaaatgttcttgatgttattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162154934|gb|FC331976.1|FC331976
EST:     GTTTCCGAAACTGGTCGACTCTTTGTCCGTAATCTTCCGTATACAGCAAC                         GGAAGAAGAACTAGCTGAACTCTTTGGCAAGTTCGGGGAGCTCTCAGAAGT
genomic: GTTTCCGAAACTGGTCGACTCTTTGTCCGTAATCTTCCGTATACAGCAACgtaagtcatc ... cctatttcagGGAAGAAGAACTAGCTGAACTCTTTGGCAAGTTCGGGGAGCTCTCAGAAGT