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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAAGACGGCTATGTCAGCAAGAAGGAAATGATCTGGGCTATTAACGAAGCATCGCCATCTGGTCGGCACGGACACAGAATTGGTGTTCAAAGATTTGgtccgtttctcgtactttcatcatccattgaattgcgtacaccactctattcaaactcgtgtgttctcttgcaagtgtgatactgacgaaatgtacgtgagtcgcaatctgttcag

Basic information

species Physcomitrella patens
transcript PP1S429_31V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100417874|gb|BY993227.1|BY993227
EST:     AGCATCGCCATCTGGTCGGCACGGACACAGAATTGGTGTTCAAAGATTTG                         AGGAAATGGACTGGGGACAA-GACGGTATGATCACATTCAAGGGAGTTTTT
genomic: AGCATCGCCATCTGGTCGGCACGGACACAGAATTGGTGTTCAAAGATTTGgtccgtttct ... atctgttcagAGGAAATGGACTGGG-ACAAAGACGGTATGATCACATTCAAGG-AGTTTTT
EST: gi|37845580|gb|BJ603588.1|BJ603588
EST:     AGCATCGCCATCTGGTCGGCACGGACACAGAATTGGTGTTCAAAGATTTG                         AGGAAATGGACTGGGACAAAGACGGTATGATCACATTCAAGGAGTTTTTGT
genomic: AGCATCGCCATCTGGTCGGCACGGACACAGAATTGGTGTTCAAAGATTTGgtccgtttct ... atctgttcagAGGAAATGGACTGGGACAAAGACGGTATGATCACATTCAAGGAGTTTTTGT
EST: gi|37845973|gb|BJ603981.1|BJ603981
EST:     AGCATCGCCATCTGGTCGGCACGGACACAGAATTGGTGTTCAAAGATTTG                         AGGAAATGGACTGGGACAAAGACGGTATGATCACATTCAAGGAGTTTTTGT
genomic: AGCATCGCCATCTGGTCGGCACGGACACAGAATTGGTGTTCAAAGATTTGgtccgtttct ... atctgttcagAGGAAATGGACTGGGACAAAGACGGTATGATCACATTCAAGGAGTTTTTGT