Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATTGAAGGTGAAGGAGTACGAGCTGTTGCGCCGCAACTTTAGTGAATCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgatttgtttgcagaatatgagttacgtttgcaatcagatgggagatggaaatatgcagctattggaagagttacgatggatggatttattctg...

Basic information

species Physcomitrella patens
transcript PP1S41_304V6.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37842439|gb|BJ600447.1|BJ600447
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|6167659|gb|AW145923.1|AW145923
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162206214|gb|FC382284.1|FC382284
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|208398384|gb|DC916467.1|DC916467
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162232852|gb|FC407505.1|FC407505
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|15728847|gb|BI741007.1|BI741007
EST:     TTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162200532|gb|FC376727.1|FC376727
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67719834|gb|BJ970093.1|BJ970093
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|37844913|gb|BJ602921.1|BJ602921
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67692429|gb|BJ952662.1|BJ952662
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67569183|gb|BJ942007.1|BJ942007
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|19782800|gb|BQ039918.1|BQ039918
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67695840|gb|BJ956073.1|BJ956073
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|19790836|gb|BQ042081.1|BQ042081
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|37822492|gb|BJ580558.1|BJ580558
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|18328502|gb|BJ160507.1|BJ160507
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|37839676|gb|BJ597684.1|BJ597684
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|18362382|gb|BJ194452.1|BJ194452
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162244690|gb|FC424618.1|FC424618
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|18374348|gb|BJ205926.1|BJ205926
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162245640|gb|FC423323.1|FC423323
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|18343896|gb|BJ175934.1|BJ175934
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162236574|gb|FC413149.1|FC413149
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|18336730|gb|BJ168753.1|BJ168753
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162244689|gb|FC424617.1|FC424617
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTTTACGGGCATTTACGGTATGGACTTTTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|15261621|gb|BI436931.1|BI436931
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|18332079|gb|BJ164091.1|BJ164091
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGANCACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162206556|gb|FC382925.1|FC382925
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67572959|gb|BJ945783.1|BJ945783
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162279100|gb|FC455439.1|FC455439
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|19790377|gb|BQ041841.1|BQ041841
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67694866|gb|BJ955099.1|BJ955099
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67578315|gb|BJ950482.1|BJ950482
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162238058|gb|FC414248.1|FC414248
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67572468|gb|BJ945292.1|BJ945292
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|18356295|gb|BJ188354.1|BJ188354
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|37828652|gb|BJ586664.1|BJ586664
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67728094|gb|BJ978353.1|BJ978353
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162232853|gb|FC407506.1|FC407506
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|15729965|gb|BI741584.1|BI741584
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|18343290|gb|BJ175328.1|BJ175328
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|19786305|gb|BQ040459.1|BQ040459
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|37833227|gb|BJ591239.1|BJ591239
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|18365237|gb|BJ197311.1|BJ197311
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|19782143|gb|BQ039816.1|BQ039816
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162202374|gb|FC379993.1|FC379993
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67696341|gb|BJ956574.1|BJ956574
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162203716|gb|FC378591.1|FC378591
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|37823089|gb|BJ581155.1|BJ581155
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67701193|gb|BJ961426.1|BJ961426
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162238059|gb|FC414249.1|FC414249
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|15320175|gb|BI487824.1|BI487824
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162236575|gb|FC413150.1|FC413150
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|19780736|gb|BQ039607.1|BQ039607
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|19789619|gb|BQ041413.1|BQ041413
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|67571525|gb|BJ944349.1|BJ944349
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162231640|gb|FC408246.1|FC408246
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
EST: gi|162203717|gb|FC378592.1|FC378592
EST:     TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAA                         GTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA
genomic: TCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 46

GTGGATTGAAGGTGAAGGAGTACGAGCTGTTGCGCCGCAACTTTAGTGAATCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgat ... cttcttgcagGTACGATCCTTCTACGGGCATTTACGGTATGGACTTCTACGTAGTACTTGAGCGCCCAGGTTACAGAGTTGGAAGAAGACGCAGAGCGAAATCTCGCGTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGATTGAAGGTGAAGGAGTACGAGCTGTTGCGCCGCAACTTTAGTGAATCTGGTTGCTTCGGGTTTGGTATTCAAGAACACATTGACCTTGGAATCAAgtaagttgatttgtttgcagaatatgagttacgtttgcaatcagatgggagatggaaatatgcagctattggaagagttacgatggatggatttattctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC