1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTGCTTCTCCATTACTGTTACAGCAACAATCCCTTCCCTTAGATTTGCCAGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAGgcacgttttcattctcattacgattctacttacaaaaccatctcatcagttttacgttttggcggaaagaaacgtaatcaaatcggggttgaacttacatttatgagctggcacttgcag
species | Physcomitrella patens |
transcript | PP1S41_1V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAG CTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCGEST: gi|162233825|gb|FC409675.1|FC409675
genomic: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAGgcacgttttc ... gcacttgcagCTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCG
EST: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAG CTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCGEST: gi|162233826|gb|FC409676.1|FC409676
genomic: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAGgcacgttttc ... gcacttgcagCTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCG
EST: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAG CTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCG
genomic: AGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAGgcacgttttc ... gcacttgcagCTGTGCTGGAGGAGATGGAAGGCGTATCGAAAGGGGATGTGTTTGGTAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGCTTCTCCATTACTGTTACAGCAACAATCCCTTCCCTTAGATTTGCCAGATGCTCTACGGGGGGAGGAGTGGGCGTTTGTGCAGCTTCCATTCGAAGgcacgttttcattctcattacgattctacttacaaaaccatctcatcagttttacgttttggcggaaagaaacgtaatcaaatcggggttgaacttacatttatgagctggcacttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT