1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTATCCCATTTATATGTCGAGAAGAGAAGGACGAAAATCTGTACCACAATGATGAGCACTGTCCTCGgtatggcattcttccacgcctgatcctatcttcgtaattacacgtatgagagagtatgagaatctttcaccaatgtgaacgttcacatagttatcaagctcccaatgatcaatttctgtgtcaatgtctgataaatgcag
species | Physcomitrella patens |
transcript | PP1S41_144V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGAGAAGAGAAGGACGAAAATCTGTACCACAATGATGAGCACTGTCCTCG CCTCTGGTTGAAGTGGGAGCAAGCGTGGGTGACTATTCAGAAAGCCACCACEST: gi|100448929|gb|CJ973228.1|CJ973228
genomic: CGAGAAGAGAAGGACGAAAATCTGTACCACAATGATGAGCACTGTCCTCGgtatggcatt ... ataaatgcagCCTCTGGTTGAAGTGGGAGCAAGCGTGGGTGACTATTCAGAAAGCCACCAC
EST: CGAGAAGAGAAGGACGAAAATCTGTACCACAATGATGAGCACTGTCCTCG CCTCTGGTTGAAGTGEST: gi|100365130|gb|BY966825.1|BY966825
genomic: CGAGAAGAGAAGGACGAAAATCTGTACCACAATGATGAGCACTGTCCTCGgtatggcatt ... ataaatgcagCCTCTGGTTGAAGTG
EST: CGAGAAGAGAAGGACGAAAATCTGTACCACAATGATGAGCACTGTCCTCG CCTCTGGTTGAAGTGGGAGCAAGCGTGGGTGACTATTCAGAAAGC-ACCAC
genomic: CGAGAAGAGAAGGACGAAAATCTGTACCACAATGATGAGCACTGTCCTCGgtatggcatt ... ataaatgcagCCTCTGGTTGAAGTGGGAGCAAGCGTGGGTGACTATTCAGAAAGCCACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGACTTTTGGAATCTCCGGATGACGTAGCGTCTATCCCATTTATATGTCGAGAAGAGAAGGACGAAAATCTGTACCACAATGATGAGCACTGTCCTCGgtatggcattcttccacgcctgatcctatcttcgtaattacacgtatgagagagtatgagaatctttcaccaatgtgaacgttcacatagttatcaagctcccaatgatcaatttctgtgtcaatgtctgataaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA