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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCCGCGTGGATTTGCCGTCAAATTTTACACTCGAGAGGGTAACTTTGATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcacataaggaacttacactcactttattgggatgcaaagtgaaatgggggatttccttcttttgctgctgagtgatgaacttaaggctatgttt...

Basic information

species Physcomitrella patens
transcript PP1S3_353V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100397012|gb|BY953940.1|BY953940
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100413461|gb|BY956682.1|BY956682
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGA
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGA
EST: gi|19790424|gb|BQ041863.1|BQ041863
EST:     ATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100401878|gb|BY954755.1|BY954755
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|162160440|gb|FC337441.1|FC337441
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208366827|gb|DC940141.1|DC940141
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100388487|gb|BY952089.1|BY952089
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100389395|gb|BY988873.1|BY988873
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100441770|gb|BY962861.1|BY962861
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCGAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208390381|gb|DC933426.1|DC933426
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100437950|gb|BY961577.1|BY961577
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100388313|gb|BY951915.1|BY951915
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100415088|gb|BY975158.1|BY975158
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCA
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCA
EST: gi|208397839|gb|DC912034.1|DC912034
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100431352|gb|BY960153.1|BY960153
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTA-G                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCA-GAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|162269381|gb|FC445249.1|FC445249
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208384128|gb|DC911264.1|DC911264
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTANG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100422959|gb|BY958085.1|BY958085
EST:     TATGGTCGGCAACAACATTCCAGTATTTCT-CATTCGAGATGGGATTAGG                         TTCCCTGATATGATT
genomic: TATGGTCGGCAACAACATTCCAGTATT-CTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATT
EST: gi|100373522|gb|BY948971.1|BY948971
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCCAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100425186|gb|BY977016.1|BY977016
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCCGAACCC-AAGAGTCACATTCA
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCC-GAACCCCAAGAGTCACATTCA
EST: gi|100441216|gb|BY980837.1|BY980837
EST:     ATATGGTCGGCAACAACATTCCCGTATTCTTCATTCGAGATGGGATTAAG                         TCCCCTGATAATGAT-CACGCCTTGA
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATA-TGATTCACGCCTTGA
EST: gi|100399198|gb|BY954249.1|BY954249
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|162171823|gb|FC348973.1|FC348973
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100385814|gb|BY951008.1|BY951008
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100355998|gb|BY946143.1|BY946143
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100403993|gb|BY955201.1|BY955201
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208392447|gb|DC907924.1|DC907924
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100356632|gb|BY965202.1|BY965202
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|67508120|gb|BJ940991.1|BJ940991
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100369670|gb|BY948592.1|BY948592
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCNAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208376904|gb|DC906845.1|DC906845
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208387941|gb|DC932865.1|DC932865
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|162190690|gb|FC367576.1|FC367576
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100402105|gb|BY973219.1|BY973219
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTTCCTGATATGATTCACGCCTTG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTG
EST: gi|67573397|gb|BJ946221.1|BJ946221
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100449037|gb|CJ973336.1|CJ973336
EST:     ATATGGTCGGCANCAACATTCCAGTATTCTTCATNCGAGATGGGAT-AAG                         TTCCNTGATATGATNCACGCC
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCC
EST: gi|100452195|gb|CJ975149.1|CJ975149
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100385323|gb|BY950915.1|BY950915
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100388606|gb|BY970754.1|BY970754
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208397130|gb|DC908144.1|DC908144
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|18325053|gb|BJ157049.1|BJ157049
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAG
EST: gi|100429808|gb|BY978099.1|BY978099
EST:     TATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAAG                         T-CCCTGATATGATTCACGCCTTGAAGCCGAA
genomic: TATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAA-Ggtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAA
EST: gi|100400264|gb|BY954390.1|BY954390
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100389047|gb|BY952251.1|BY952251
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100445088|gb|BY964387.1|BY964387
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATT
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATT
EST: gi|208400560|gb|DC904536.1|DC904536
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100426840|gb|BY977389.1|BY977389
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCG
EST: gi|100385394|gb|BY950986.1|BY950986
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100451699|gb|CJ974897.1|CJ974897
EST:     TATGGTCGGCANCAACATTCCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCC-TGATATGATNCACGCCTTGA
genomic: TATGGTCGGCAACAACATTCC-AGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGA
EST: gi|100417386|gb|BY957305.1|BY957305
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         T-CCCTGATATGATTCACGCCTTGAAGCCGAACC
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACC
EST: gi|100354185|gb|BY945750.1|BY945750
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATAT
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATAT
EST: gi|100378557|gb|BY968659.1|BY968659
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTCAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCA-GAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100413876|gb|BY975017.1|BY975017
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTC
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTC
EST: gi|100394319|gb|BY972022.1|BY972022
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100430614|gb|BY978308.1|BY978308
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|208348570|gb|DC905835.1|DC905835
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|67507546|gb|BJ940428.1|BJ940428
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
EST: gi|100367504|gb|BY984724.1|BY984724
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAAGC-GAACCCCAAGAGTCACATTCA
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAA-GCCGAACCCCAAGAGTCACATTCA
EST: gi|208398062|gb|DC904367.1|DC904367
EST:     ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAG                         TTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG
genomic: ATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcaca ... ttttgtacagTTCCCTGATATGATTCACGCCTTGAAGCCGAACCCCAAGAGTCACATTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACCCGCGTGGATTTGCCGTCAAATTTTACACTCGAGAGGGTAACTTTGATATGGTCGGCAACAACATTCCAGTATTCTTCATTCGAGATGGGATTAAGgtacatcacataaggaacttacactcactttattgggatgcaaagtgaaatgggggatttccttcttttgctgctgagtgatgaacttaaggctatgttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG